Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   N8A75_RS19085 Genome accession   NZ_CP104878
Coordinates   3524469..3525158 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain 4ZT     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3519469..3530158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A75_RS19050 (N8A75_19050) flgN 3519649..3520131 (-) 483 WP_003227999.1 flagellar protein FlgN -
  N8A75_RS19055 (N8A75_19055) flgM 3520147..3520413 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  N8A75_RS19060 (N8A75_19060) yvyF 3520494..3520913 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  N8A75_RS19065 (N8A75_19065) comFC 3520987..3521709 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  N8A75_RS19070 (N8A75_19070) comFB 3521673..3521969 (-) 297 WP_003227989.1 late competence protein ComFB -
  N8A75_RS19075 (N8A75_19075) comFA 3522029..3523420 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  N8A75_RS19080 (N8A75_19080) fakBA 3523526..3524371 (-) 846 WP_003244125.1 DegV family protein -
  N8A75_RS19085 (N8A75_19085) degU 3524469..3525158 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  N8A75_RS19090 (N8A75_19090) degS 3525241..3526398 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  N8A75_RS19095 (N8A75_19095) yvyE 3526615..3527268 (+) 654 WP_003227979.1 YigZ family protein -
  N8A75_RS19100 (N8A75_19100) tagV 3527268..3528443 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  N8A75_RS19105 (N8A75_19105) tagO 3528516..3529592 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=733151 N8A75_RS19085 WP_003219701.1 3524469..3525158(-) (degU) [Bacillus subtilis strain 4ZT]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=733151 N8A75_RS19085 WP_003219701.1 3524469..3525158(-) (degU) [Bacillus subtilis strain 4ZT]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1