Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   P5628_RS14265 Genome accession   NZ_CP120577
Coordinates   2710832..2711527 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain PRO53     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2705832..2716527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS14240 (P5628_14240) minD 2706768..2707574 (-) 807 WP_042975118.1 septum site-determining protein MinD -
  P5628_RS14245 (P5628_14245) minC 2707576..2708256 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  P5628_RS14250 (P5628_14250) mreD 2708309..2708827 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  P5628_RS14255 (P5628_14255) mreC 2708824..2709696 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  P5628_RS14260 (P5628_14260) mreB 2709727..2710740 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  P5628_RS14265 (P5628_14265) ysxA/radC 2710832..2711527 (-) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  P5628_RS14270 (P5628_14270) maf 2711564..2712133 (-) 570 WP_049141066.1 Maf family nucleotide pyrophosphatase -
  P5628_RS14275 (P5628_14275) spoIIB 2712286..2713284 (-) 999 WP_277708871.1 stage II sporulation protein SpoIIB -
  P5628_RS14280 (P5628_14280) comC 2713418..2714164 (-) 747 WP_021480242.1 A24 family peptidase Machinery gene
  P5628_RS14285 (P5628_14285) folC 2714305..2715597 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=732724 P5628_RS14265 WP_003246034.1 2710832..2711527(-) (ysxA/radC) [Bacillus subtilis strain PRO53]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=732724 P5628_RS14265 WP_003246034.1 2710832..2711527(-) (ysxA/radC) [Bacillus subtilis strain PRO53]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424