Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N4T34_RS30070 Genome accession   NZ_CP104835
Coordinates   6484853..6485374 (-) Length   173 a.a.
NCBI ID   WP_026382027.1    Uniprot ID   A0A6S7E5D3
Organism   Achromobacter xylosoxidans strain 2021CK-01139     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6479853..6490374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T34_RS30040 (N4T34_30065) - 6480047..6480664 (+) 618 WP_020925847.1 TetR/AcrR family transcriptional regulator -
  N4T34_RS30045 (N4T34_30070) - 6480970..6481827 (+) 858 WP_026382030.1 cysteine hydrolase -
  N4T34_RS30050 (N4T34_30075) - 6481962..6482552 (-) 591 WP_006389668.1 TetR/AcrR family transcriptional regulator -
  N4T34_RS30055 (N4T34_30080) - 6482684..6482989 (-) 306 WP_020925844.1 DUF4148 domain-containing protein -
  N4T34_RS30060 (N4T34_30085) - 6483070..6483375 (-) 306 WP_006389666.1 DUF4148 domain-containing protein -
  N4T34_RS30065 (N4T34_30090) - 6483640..6484368 (-) 729 WP_054481990.1 class I SAM-dependent methyltransferase -
  N4T34_RS30070 (N4T34_30095) ssb 6484853..6485374 (-) 522 WP_026382027.1 single-stranded DNA-binding protein Machinery gene
  N4T34_RS30075 (N4T34_30100) - 6485657..6486841 (-) 1185 WP_020925837.1 MFS transporter -
  N4T34_RS30080 (N4T34_30105) uvrA 6486976..6489831 (+) 2856 WP_390624461.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18656.68 Da        Isoelectric Point: 5.9656

>NTDB_id=732538 N4T34_RS30070 WP_026382027.1 6484853..6485374(-) (ssb) [Achromobacter xylosoxidans strain 2021CK-01139]
MASVNKVILVGNLGRDPEVRYSPDGAAICNMSIATTSTWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREDGGGGGGSYGGGGGYDDAPARQPQQRAPAQRPAPQQRPAPQAAPAGG
GANLADMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=732538 N4T34_RS30070 WP_026382027.1 6484853..6485374(-) (ssb) [Achromobacter xylosoxidans strain 2021CK-01139]
ATGGCATCGGTTAACAAAGTCATTCTCGTGGGCAACCTGGGTCGCGACCCGGAAGTCCGCTACAGCCCCGACGGGGCCGC
AATCTGCAACATGTCCATCGCCACCACCTCCACCTGGAAGGACAAGGCCTCGGGCGAGCGCCGCGAAGAAACCGAATGGC
ACCGCGTGGTCATGTACAACCGCCTGGCCGAGATCGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTCTATATCGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGACACCGGCGCTGACCGCTACAGCACCGAAATCGTAGCCGACCAGATGCA
GATGCTGGGCGGCCGCGAAGATGGCGGCGGCGGTGGCGGCAGCTATGGCGGTGGCGGCGGTTACGACGACGCGCCGGCAC
GCCAGCCGCAGCAACGCGCCCCGGCCCAGCGCCCGGCGCCGCAACAGCGTCCGGCACCGCAGGCCGCGCCCGCCGGTGGC
GGCGCCAACCTGGCCGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6S7E5D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.645

100

0.578
  ssb Glaesserella parasuis strain SC1401

51.075

100

0.549
  ssb Neisseria gonorrhoeae MS11

53.143

100

0.538
  ssb Neisseria meningitidis MC58

52.571

100

0.532