Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   P5707_RS11650 Genome accession   NZ_CP120567
Coordinates   2437450..2438460 (+) Length   336 a.a.
NCBI ID   WP_000568519.1    Uniprot ID   Q32HA1
Organism   Escherichia coli strain A0 34/86     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2432450..2443460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5707_RS11620 (P5707_11620) nudB 2434174..2434626 (+) 453 WP_077393227.1 dihydroneopterin triphosphate diphosphatase -
  P5707_RS11625 (P5707_11625) yebC 2434655..2435395 (+) 741 WP_000907234.1 YebC/PmpR family DNA-binding transcriptional regulator -
  P5707_RS11630 (P5707_11630) ruvC 2435430..2435951 (+) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  P5707_RS11635 (P5707_11635) yebB 2435953..2436555 (-) 603 WP_001024946.1 YebB family permuted papain-like enzyme -
  P5707_RS11640 (P5707_11640) yobI 2436626..2436691 (+) 66 WP_072123646.1 stress response small protein YobI -
  P5707_RS11645 (P5707_11645) ruvA 2436830..2437441 (+) 612 WP_000580323.1 Holliday junction branch migration protein RuvA -
  P5707_RS11650 (P5707_11650) ruvB 2437450..2438460 (+) 1011 WP_000568519.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  P5707_RS11655 (P5707_11655) znuB 2438605..2439390 (-) 786 WP_000571479.1 zinc ABC transporter permease subunit ZnuB -
  P5707_RS11660 (P5707_11660) znuC 2439387..2440142 (-) 756 WP_000202996.1 zinc ABC transporter ATP-binding protein ZnuC -
  P5707_RS11665 (P5707_11665) znuA 2440221..2441153 (+) 933 WP_001347089.1 zinc ABC transporter substrate-binding protein ZnuA -
  P5707_RS11670 (P5707_11670) mepM 2441169..2442491 (+) 1323 WP_001184045.1 murein DD-endopeptidase MepM -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37173.77 Da        Isoelectric Point: 4.7818

>NTDB_id=732503 P5707_RS11650 WP_000568519.1 2437450..2438460(+) (ruvB) [Escherichia coli strain A0 34/86]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=732503 P5707_RS11650 WP_000568519.1 2437450..2438460(+) (ruvB) [Escherichia coli strain A0 34/86]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCGCAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTATTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAATATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCAATGCTCACTAACCTTGAACCACA
CGATGTACTGTTTATTGATGAGATCCACCGTCTTTCACCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGATTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGTGCGCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTACTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae R6

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae D39

58.934

94.94

0.56
  ruvB Synechocystis sp. PCC 6803

53.251

96.131

0.512
  ruvB Helicobacter pylori 26695

52.038

94.94

0.494