Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N5P16_RS03050 Genome accession   NZ_CP104734
Coordinates   659112..659690 (+) Length   192 a.a.
NCBI ID   WP_004923497.1    Uniprot ID   A0A7G2SEA9
Organism   Acinetobacter baylyi strain JAT2044     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 654112..664690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS03025 (N5P16_03025) - 654599..654973 (-) 375 WP_004923487.1 hypothetical protein -
  N5P16_RS03030 (N5P16_03030) - 655162..655503 (+) 342 WP_004923489.1 GlpM family protein -
  N5P16_RS03035 (N5P16_03035) tenA 655608..656279 (-) 672 WP_004923492.1 thiaminase II -
  N5P16_RS03040 (N5P16_03040) - 656475..657557 (+) 1083 WP_004923493.1 DUF475 domain-containing protein -
  N5P16_RS03045 (N5P16_03045) - 657695..659059 (+) 1365 WP_004923496.1 MFS transporter -
  N5P16_RS03050 (N5P16_03050) ssb 659112..659690 (+) 579 WP_004923497.1 single-stranded DNA-binding protein Machinery gene
  N5P16_RS03055 (N5P16_03055) - 660226..661665 (+) 1440 WP_004923500.1 amino acid permease -
  N5P16_RS03060 (N5P16_03060) - 661735..663234 (-) 1500 WP_004923502.1 PLP-dependent aminotransferase family protein -
  N5P16_RS03065 (N5P16_03065) gabT 663387..664673 (+) 1287 WP_004923505.1 4-aminobutyrate--2-oxoglutarate transaminase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21248.97 Da        Isoelectric Point: 6.4809

>NTDB_id=731685 N5P16_RS03050 WP_004923497.1 659112..659690(+) (ssb) [Acinetobacter baylyi strain JAT2044]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDTRSQGDQPMSGGNDFNQPRFNNNAPQQNTGYNQGGGYNNSGNNNFNQGSGY
GNGGSNNSNQGGYVPKAPQQPAPADLDDDLPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=731685 N5P16_RS03050 WP_004923497.1 659112..659690(+) (ssb) [Acinetobacter baylyi strain JAT2044]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCGGAAACTAAAACTTTTCCAAATGGTGGATC
TCTGACACAATTTTCAATTGCAACCAGCGAGGCGTGGACAGATAAAAGTACCGGTGAGCGTAAAGAACAGACCGAATGGC
ACCGTATTGTACTGCATAATCGTTTAGGTGAAATTGCACAACAATACCTGCGTAAAGGCTCTAAAGTTTATATTGAAGGT
TCATTGCGTACACGCCAGTGGACAGACCAGAATGGTCAGGAGCGTTATACCACCGAAATTCGTGGTGACCAGATGCAAAT
GCTAGATACACGTTCACAAGGCGATCAGCCAATGAGCGGTGGTAACGATTTTAATCAGCCACGCTTTAACAATAATGCGC
CGCAGCAAAACACAGGCTATAACCAAGGTGGCGGTTACAATAACAGCGGCAATAACAACTTCAATCAAGGCAGTGGTTAT
GGCAATGGCGGTAGCAATAACAGTAATCAAGGTGGTTATGTGCCAAAAGCACCGCAGCAACCTGCACCAGCCGATTTAGA
CGATGACTTACCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G2SEA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.897

100

0.568
  ssb Vibrio cholerae strain A1552

44.444

100

0.458
  ssb Neisseria meningitidis MC58

39.487

100

0.401
  ssb Neisseria gonorrhoeae MS11

39.487

100

0.401