Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NAL19_RS17585 Genome accession   NZ_CP104733
Coordinates   3918353..3918892 (+) Length   179 a.a.
NCBI ID   WP_263058022.1    Uniprot ID   -
Organism   Pectobacterium sp. F1-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3913353..3923892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAL19_RS17565 (NAL19_3776) - 3913765..3914165 (-) 401 Protein_3439 type II toxin-antitoxin system VapC family toxin -
  NAL19_RS17570 (NAL19_3777) vapB 3914177..3914404 (-) 228 WP_225085721.1 type II toxin-antitoxin system VapB family antitoxin -
  NAL19_RS17575 (NAL19_3778) - 3914830..3915249 (-) 420 WP_263058020.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NAL19_RS17580 (NAL19_3779) uvrA 3915266..3918100 (-) 2835 WP_263058021.1 excinuclease ABC subunit UvrA -
  NAL19_RS17585 (NAL19_3780) ssb 3918353..3918892 (+) 540 WP_263058022.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NAL19_RS17590 (NAL19_3781) - 3919502..3919783 (+) 282 WP_263058023.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18961.89 Da        Isoelectric Point: 5.2456

>NTDB_id=731665 NAL19_RS17585 WP_263058022.1 3918353..3918892(+) (ssb) [Pectobacterium sp. F1-1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWSDQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQGGWGQPQQPQGGNQFSGGAQSQQRPAQN
STPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=731665 NAL19_RS17585 WP_263058022.1 3918353..3918892(+) (ssb) [Pectobacterium sp. F1-1]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
CGGTGCAGTTGCCAACATCACGCTGGCGACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AGTGGCACCGTGTGGTTCTGTTCGGCAAACTGGCAGAAGTCGCAGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGTCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAATGTCGG
CGGCACCATGCAGATGTTAGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGCGGTGGCAATGCAGGTGGCGGCCAAGGCG
GTTGGGGTCAACCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCAGCAACGCCCAGCGCAAAAT
AGCACGCCAGCACAAAGCAACGAACCACCAATGGATTTCGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.725

100

0.76
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.603
  ssb Neisseria gonorrhoeae MS11

46.328

98.883

0.458
  ssb Neisseria meningitidis MC58

46.067

99.441

0.458