Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | N5P21_RS28040 | Genome accession | NZ_CP104727 |
| Coordinates | 6385955..6386827 (+) | Length | 290 a.a. |
| NCBI ID | WP_261746927.1 | Uniprot ID | - |
| Organism | Pseudomonas citronellolis strain G5.80 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6380955..6391827
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5P21_RS28025 (N5P21_28045) | comP | 6382406..6382804 (-) | 399 | WP_261746925.1 | pilin | Machinery gene |
| N5P21_RS28030 (N5P21_28050) | pilB | 6383026..6384729 (+) | 1704 | WP_261746926.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| N5P21_RS28035 (N5P21_28055) | - | 6384733..6385951 (+) | 1219 | Protein_5551 | type II secretion system F family protein | - |
| N5P21_RS28040 (N5P21_28060) | pilD | 6385955..6386827 (+) | 873 | WP_261746927.1 | A24 family peptidase | Machinery gene |
| N5P21_RS28045 (N5P21_28065) | coaE | 6386901..6387509 (+) | 609 | WP_009617624.1 | dephospho-CoA kinase | - |
| N5P21_RS28050 (N5P21_28070) | yacG | 6387506..6387715 (+) | 210 | WP_043272268.1 | DNA gyrase inhibitor YacG | - |
| N5P21_RS28055 (N5P21_28075) | - | 6387990..6388184 (+) | 195 | WP_074977500.1 | stability determinant | - |
| N5P21_RS28060 (N5P21_28080) | - | 6388244..6388435 (+) | 192 | WP_074977497.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| N5P21_RS28065 (N5P21_28085) | - | 6388442..6388657 (-) | 216 | WP_043318062.1 | hypothetical protein | - |
| N5P21_RS28070 (N5P21_28090) | - | 6388765..6389481 (-) | 717 | WP_261746928.1 | energy-coupling factor ABC transporter permease | - |
| N5P21_RS28075 (N5P21_28095) | - | 6389478..6389948 (-) | 471 | WP_261746929.1 | FAD/FMN-containing dehydrogenase | - |
| N5P21_RS28080 (N5P21_28100) | - | 6389952..6390368 (-) | 417 | WP_261746930.1 | GNAT family N-acetyltransferase | - |
| N5P21_RS28085 (N5P21_28105) | - | 6390501..6391130 (+) | 630 | WP_261746931.1 | DUF1780 domain-containing protein | - |
| N5P21_RS28090 (N5P21_28110) | - | 6391201..6391374 (+) | 174 | WP_009617611.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32045.00 Da Isoelectric Point: 6.5928
>NTDB_id=731604 N5P21_RS28040 WP_261746927.1 6385955..6386827(+) (pilD) [Pseudomonas citronellolis strain G5.80]
MPIIEFLASHALAFVLCAALLGLLVGSFLNVVIHRLPKMMELEWQQQARDTLSLPQPEEKATYNLVLPNSQCPHCGHEIH
AWENIPVISYLALRGKCSACKAPISARYPLVELATALLSGFVAWHFGFTWQTGAMLLLTWGLLAMSLIDVDHQLLPDVLV
LPLLWLGLIVNYFGLFASLGDALWGAVFGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILFSSLVG
AVLGVILLRLRNAETSTPIPFGPYLAIAGWIALLWGDQITTTYLQFAGFR
MPIIEFLASHALAFVLCAALLGLLVGSFLNVVIHRLPKMMELEWQQQARDTLSLPQPEEKATYNLVLPNSQCPHCGHEIH
AWENIPVISYLALRGKCSACKAPISARYPLVELATALLSGFVAWHFGFTWQTGAMLLLTWGLLAMSLIDVDHQLLPDVLV
LPLLWLGLIVNYFGLFASLGDALWGAVFGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILFSSLVG
AVLGVILLRLRNAETSTPIPFGPYLAIAGWIALLWGDQITTTYLQFAGFR
Nucleotide
Download Length: 873 bp
>NTDB_id=731604 N5P21_RS28040 WP_261746927.1 6385955..6386827(+) (pilD) [Pseudomonas citronellolis strain G5.80]
ATGCCCATAATCGAATTTCTGGCCAGCCACGCGCTGGCCTTTGTTTTATGCGCCGCCCTGCTCGGTCTTCTAGTCGGCAG
CTTCCTCAACGTGGTCATCCATCGCCTGCCGAAGATGATGGAACTGGAATGGCAGCAACAGGCGCGCGATACGCTTTCCC
TGCCCCAGCCCGAGGAGAAAGCCACCTACAACCTGGTCCTACCCAACTCCCAATGCCCGCATTGCGGCCATGAGATCCAT
GCCTGGGAGAACATCCCCGTGATCAGCTACCTGGCCCTACGCGGCAAGTGCTCGGCCTGCAAGGCGCCGATCAGTGCGCG
TTATCCGCTGGTCGAGTTGGCCACCGCCCTGCTCTCCGGTTTCGTTGCCTGGCACTTCGGCTTTACCTGGCAGACAGGGG
CCATGCTGTTGCTGACCTGGGGGCTGCTGGCTATGAGCCTGATCGACGTCGACCACCAGTTGTTGCCGGATGTGCTGGTT
CTACCGCTGCTCTGGCTGGGGTTGATCGTCAATTACTTCGGGCTTTTTGCCAGCCTGGGCGATGCGCTCTGGGGCGCGGT
GTTCGGTTACCTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGGTGTTGCCGCTGACCATTCTGTTCTCGTCCCTGGTCGGG
GCCGTGCTGGGCGTCATTCTGCTGCGTCTGCGCAATGCCGAGACCAGCACGCCGATCCCCTTCGGGCCCTATCTGGCCAT
TGCCGGCTGGATTGCGCTGCTCTGGGGTGATCAAATAACCACTACCTATCTGCAGTTCGCCGGTTTCCGGTAG
ATGCCCATAATCGAATTTCTGGCCAGCCACGCGCTGGCCTTTGTTTTATGCGCCGCCCTGCTCGGTCTTCTAGTCGGCAG
CTTCCTCAACGTGGTCATCCATCGCCTGCCGAAGATGATGGAACTGGAATGGCAGCAACAGGCGCGCGATACGCTTTCCC
TGCCCCAGCCCGAGGAGAAAGCCACCTACAACCTGGTCCTACCCAACTCCCAATGCCCGCATTGCGGCCATGAGATCCAT
GCCTGGGAGAACATCCCCGTGATCAGCTACCTGGCCCTACGCGGCAAGTGCTCGGCCTGCAAGGCGCCGATCAGTGCGCG
TTATCCGCTGGTCGAGTTGGCCACCGCCCTGCTCTCCGGTTTCGTTGCCTGGCACTTCGGCTTTACCTGGCAGACAGGGG
CCATGCTGTTGCTGACCTGGGGGCTGCTGGCTATGAGCCTGATCGACGTCGACCACCAGTTGTTGCCGGATGTGCTGGTT
CTACCGCTGCTCTGGCTGGGGTTGATCGTCAATTACTTCGGGCTTTTTGCCAGCCTGGGCGATGCGCTCTGGGGCGCGGT
GTTCGGTTACCTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGGTGTTGCCGCTGACCATTCTGTTCTCGTCCCTGGTCGGG
GCCGTGCTGGGCGTCATTCTGCTGCGTCTGCGCAATGCCGAGACCAGCACGCCGATCCCCTTCGGGCCCTATCTGGCCAT
TGCCGGCTGGATTGCGCTGCTCTGGGGTGATCAAATAACCACTACCTATCTGCAGTTCGCCGGTTTCCGGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
57.091 |
94.828 |
0.541 |
| pilD | Vibrio campbellii strain DS40M4 |
55.477 |
97.586 |
0.541 |
| pilD | Acinetobacter baumannii D1279779 |
54.035 |
98.276 |
0.531 |
| pilD | Acinetobacter nosocomialis M2 |
53.684 |
98.276 |
0.528 |
| pilD | Neisseria gonorrhoeae MS11 |
50.951 |
90.69 |
0.462 |