Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N5980_RS14560 Genome accession   NZ_CP104651
Coordinates   2992291..2992875 (-) Length   194 a.a.
NCBI ID   WP_004781559.1    Uniprot ID   N8VKE0
Organism   Acinetobacter variabilis strain 2021CK-01005     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2987291..2997875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5980_RS14535 (N5980_14525) - 2987413..2988720 (-) 1308 WP_214001692.1 FAD-dependent oxidoreductase -
  N5980_RS14540 (N5980_14530) - 2989135..2990013 (-) 879 WP_214001693.1 pirin family protein -
  N5980_RS14545 (N5980_14535) ahpC 2990259..2990822 (-) 564 WP_005232609.1 alkyl hydroperoxide reductase subunit C -
  N5980_RS14550 (N5980_14540) - 2990974..2991618 (-) 645 WP_214001694.1 TetR/AcrR family transcriptional regulator -
  N5980_RS14555 (N5980_14545) - 2991757..2992221 (+) 465 WP_214001695.1 hotdog fold domain-containing protein -
  N5980_RS14560 (N5980_14550) ssb 2992291..2992875 (-) 585 WP_004781559.1 single-stranded DNA-binding protein Machinery gene
  N5980_RS14565 (N5980_14555) - 2992927..2994291 (-) 1365 WP_004781558.1 MFS transporter -
  N5980_RS14570 (N5980_14560) - 2994416..2995474 (-) 1059 WP_004781556.1 RNA-guided endonuclease InsQ/TnpB family protein -
  N5980_RS14575 (N5980_14565) - 2995657..2996748 (-) 1092 WP_004781554.1 DUF475 domain-containing protein -
  N5980_RS14580 (N5980_14570) tenA 2996971..2997642 (+) 672 WP_004781553.1 thiaminase II -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21179.89 Da        Isoelectric Point: 6.4819

>NTDB_id=731265 N5980_RS14560 WP_004781559.1 2992291..2992875(-) (ssb) [Acinetobacter variabilis strain 2021CK-01005]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQSGQERYTTEIRGEQMQMLDSGRPQGEQGDNGFNQPRFNNNNQGGGYGNNPQGGYGSAPQQGGFNNNQGGG
YGNNNQNNQGGYAPKSAPAPVAAPAADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=731265 N5980_RS14560 WP_004781559.1 2992291..2992875(-) (ssb) [Acinetobacter variabilis strain 2021CK-01005]
ATGCGTGGTGTTAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCTGAGACCAAAACTTTCCCAAATGGTGGTTC
TCTCACTCAATTCTCTATCGCAACCAGCGATTCATGGACTGATAAAAATACGGGCGAACGTAAAGAGCAAACCGAATGGC
ATCGTATTGTGCTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTGCGCAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTACGTACCCGTCAATGGACAGATCAAAGCGGTCAAGAACGCTACACAACGGAAATCCGTGGTGAGCAAATGCAAAT
GCTGGATTCTGGTCGTCCACAAGGCGAGCAGGGCGATAACGGGTTTAACCAGCCACGTTTTAATAACAATAACCAGGGTG
GCGGTTATGGCAATAATCCTCAAGGTGGTTATGGCTCAGCTCCTCAGCAAGGTGGTTTTAACAATAATCAGGGCGGTGGT
TATGGCAACAATAACCAAAATAACCAGGGTGGTTATGCGCCGAAGTCTGCACCTGCTCCAGTAGCAGCGCCTGCAGCTGA
TCTGGATGATGATCTTCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8VKE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50

100

0.521
  ssb Vibrio cholerae strain A1552

45

100

0.464
  ssb Neisseria meningitidis MC58

39.796

100

0.402
  ssb Neisseria gonorrhoeae MS11

39.796

100

0.402