Detailed information NTG0073097

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GZK95_RS12850
• Genome accession: NZ_AP019654
• Coordinates: 2823515..2824384 (+)
• Length: 289 a.a.
• NCBI ID: WP_075715363.1
• Uniprot ID: -
• Organism: Vibrio panuliri strain JCM 19500
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2818515..2829384

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZK95_RS12830	-	2820148..2820564 (+)	417	WP_075706953.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
GZK95_RS12835	pilB	2820564..2822243 (+)	1680	WP_075715364.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GZK95_RS12840	-	2822245..2823048 (+)	804	WP_083626249.1	type II secretion system F family protein	-
GZK95_RS12845	pilC	2823045..2823467 (+)	423	WP_083626247.1	type II secretion system F family protein	Machinery gene
GZK95_RS12850	pilD	2823515..2824384 (+)	870	WP_075715363.1	A24 family peptidase	Machinery gene
GZK95_RS12855	coaE	2824386..2824994 (+)	609	WP_075706961.1	dephospho-CoA kinase	-
GZK95_RS12860	zapD	2825028..2825768 (+)	741	WP_075706963.1	cell division protein ZapD	-
GZK95_RS12865	yacG	2825823..2826017 (+)	195	WP_075706965.1	DNA gyrase inhibitor YacG	-
GZK95_RS12870	rplS	2826341..2826694 (-)	354	WP_038173824.1	50S ribosomal protein L19	-
GZK95_RS12875	trmD	2826737..2827480 (-)	744	WP_075706967.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
GZK95_RS12880	rimM	2827506..2828054 (-)	549	WP_075715362.1	ribosome maturation factor RimM	-
GZK95_RS12885	rpsP	2828082..2828330 (-)	249	WP_005593968.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32267.58 Da
• Isoelectric Point: 7.5360

>NTDB_id=73097 GZK95_RS12850 WP_075715363.1 2823515..2824384(+) (pilD) [Vibrio panuliri strain JCM 19500]
MAIFSYYPWLFPLLATVFGLLVGSFLNVVIYRLPIMMEREWRKECSESFPEANLTVDQSRFNLSVPRSACPNCHTPIRAL
DNIPVLSWLMLGGKCHQCKTKISARYPLIELLTAGMCGLVALEFGFSYFAIALLFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGICLALVGISPVSLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSLVGL
VFGIIQLRMQKKGIDMAFPFGPYLAIAGWVATMWGSEILHHYYRFLLGA

Nucleotide

• Length: 870 bp

>NTDB_id=73097 GZK95_RS12850 WP_075715363.1 2823515..2824384(+) (pilD) [Vibrio panuliri strain JCM 19500]
ATGGCTATATTTTCTTACTACCCTTGGCTGTTCCCATTGTTAGCAACGGTTTTCGGCTTACTAGTCGGCAGCTTTCTTAA
TGTGGTGATTTACCGTTTACCGATTATGATGGAGCGAGAGTGGCGTAAAGAGTGCAGCGAGAGTTTTCCTGAAGCCAACC
TGACCGTCGATCAAAGTCGTTTTAACCTAAGTGTGCCCCGCTCAGCATGCCCAAACTGTCATACGCCAATACGTGCATTG
GATAATATCCCCGTGCTCAGTTGGTTAATGCTGGGTGGAAAATGTCATCAGTGCAAAACGAAAATCAGTGCGCGCTACCC
TTTAATCGAGCTATTAACTGCAGGTATGTGTGGTCTAGTCGCATTAGAGTTTGGTTTTAGCTATTTTGCTATCGCACTAC
TTTTTTTCACCTTTGTGCTAATTGCAGCAACCTTTATCGATCTCGATACCATGTTACTGCCCGATCAATTGACACTACCG
CTAATGTGGGCAGGGATCTGCCTTGCACTCGTTGGGATTAGCCCTGTCAGCCTACAAGACTCTGTAATTGGTGCCATCGC
GGGTTATCTCTGCCTGTGGAGTGTCTATTGGGGGTTTAAATTGCTGACCGGCAAAGAAGGCATGGGTTACGGTGACTTCA
AGTTACTAGCCGCGCTTGGCGCTTGGTTGGGATGGCAGTATTTACCCATGATTATTTTGCTCTCATCACTGGTTGGATTA
GTGTTTGGCATTATTCAGCTCAGAATGCAAAAGAAAGGGATTGATATGGCTTTTCCGTTTGGTCCTTATCTTGCTATCGC
GGGTTGGGTTGCCACAATGTGGGGCAGCGAGATCCTTCATCATTACTACCGTTTTTTACTAGGAGCGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	73.958	99.654	0.737
pilD	Vibrio cholerae strain A1552	70.833	99.654	0.706
pilD	Neisseria gonorrhoeae MS11	55.426	89.273	0.495
pilD	Acinetobacter nosocomialis M2	51.894	91.349	0.474
pilD	Acinetobacter baumannii D1279779	51.894	91.349	0.474