Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   K6J80_RS11040 Genome accession   NZ_AP024553
Coordinates   2438568..2439251 (+) Length   227 a.a.
NCBI ID   WP_001082313.1    Uniprot ID   G9IDB0
Organism   Vibrio cholerae strain IDH-03329     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2433568..2444251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J80_RS11010 - 2434528..2435544 (-) 1017 WP_000862956.1 YqaJ viral recombinase family protein -
  K6J80_RS11015 - 2435605..2435748 (-) 144 WP_000167277.1 hypothetical protein -
  K6J80_RS11020 bet 2435830..2436648 (-) 819 WP_000414662.1 phage recombination protein Bet -
  K6J80_RS11025 - 2436728..2437147 (-) 420 WP_000795985.1 single-stranded DNA-binding protein -
  K6J80_RS11030 - 2437163..2437489 (-) 327 WP_000455723.1 hypothetical protein -
  K6J80_RS11035 - 2437857..2438459 (+) 603 WP_000035785.1 hypothetical protein -
  K6J80_RS11040 ideA 2438568..2439251 (+) 684 WP_001082313.1 endonuclease Regulator
  K6J80_RS11045 - 2439482..2440498 (+) 1017 WP_001918293.1 AAA family ATPase -
  K6J80_RS11050 istA 2440606..2442105 (+) 1500 WP_113706005.1 IS21 family transposase -
  K6J80_RS11055 istB 2442095..2442850 (+) 756 WP_000546748.1 IS21-like element helper ATPase IstB -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26424.51 Da        Isoelectric Point: 7.5402

>NTDB_id=73096 K6J80_RS11040 WP_001082313.1 2438568..2439251(+) (ideA) [Vibrio cholerae strain IDH-03329]
MNRTNFLVTFLIALFAIPAFAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNESRAYGQCDFEVDFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEKLRDLRIRGIQGKSNCYVSGSC

Nucleotide


Download         Length: 684 bp        

>NTDB_id=73096 K6J80_RS11040 WP_001082313.1 2438568..2439251(+) (ideA) [Vibrio cholerae strain IDH-03329]
ATGAATAGAACTAATTTTCTCGTTACCTTCTTAATAGCGTTGTTCGCTATCCCTGCATTTGCAGAACACCCAACATCGTT
CAGCCAGGCAAAACGATTTGCCCGAGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAGAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCTTGGGAAATTGGCCATCAACGCCAATGCTGGCAAAACGGTGGACGTCGGAACTGCGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTTTCGGATCTCCATAACCTCGTACCATCAGTAGGTGAGCTCAACGGGGATAGATCAAATTTTC
GATTTGGAATGATTCCGAACGAATCAAGGGCCTATGGTCAATGTGATTTCGAAGTTGATTTCAAAGACCGCCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGACA
ACAAACTCAGCTATTTGAAGCTTGGTCAAGAATGGACCCTGTTGATGAGTGGGAAAAATTACGTGATTTGAGGATTAGAG
GCATTCAAGGTAAGTCTAATTGCTATGTATCAGGCAGCTGCTAG

Domains

Predicted by InterProScan.

Endonuclease I (Endonuclease_1)

(41-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G9IDB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

100

100

1
  dns Aliivibrio fischeri ES114

52.609

100

0.533
  dns Vibrio parahaemolyticus RIMD 2210633

52.402

100

0.529
  dns Vibrio cholerae strain A1552

51.556

99.119

0.511
  dns Campylobacter jejuni RM1221

38.393

98.678

0.379

Multiple sequence alignment