Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GZK95_RS12845 Genome accession   NZ_AP019654
Coordinates   2823045..2823467 (+) Length   140 a.a.
NCBI ID   WP_083626247.1    Uniprot ID   -
Organism   Vibrio panuliri strain JCM 19500     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2818045..2828467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZK95_RS12830 - 2820148..2820564 (+) 417 WP_075706953.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GZK95_RS12835 pilB 2820564..2822243 (+) 1680 WP_075715364.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GZK95_RS12840 - 2822245..2823048 (+) 804 WP_083626249.1 type II secretion system F family protein -
  GZK95_RS12845 pilC 2823045..2823467 (+) 423 WP_083626247.1 type II secretion system F family protein Machinery gene
  GZK95_RS12850 pilD 2823515..2824384 (+) 870 WP_075715363.1 A24 family peptidase Machinery gene
  GZK95_RS12855 coaE 2824386..2824994 (+) 609 WP_075706961.1 dephospho-CoA kinase -
  GZK95_RS12860 zapD 2825028..2825768 (+) 741 WP_075706963.1 cell division protein ZapD -
  GZK95_RS12865 yacG 2825823..2826017 (+) 195 WP_075706965.1 DNA gyrase inhibitor YacG -
  GZK95_RS12870 rplS 2826341..2826694 (-) 354 WP_038173824.1 50S ribosomal protein L19 -
  GZK95_RS12875 trmD 2826737..2827480 (-) 744 WP_075706967.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  GZK95_RS12880 rimM 2827506..2828054 (-) 549 WP_075715362.1 ribosome maturation factor RimM -
  GZK95_RS12885 rpsP 2828082..2828330 (-) 249 WP_005593968.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15395.15 Da        Isoelectric Point: 4.2103

>NTDB_id=73096 GZK95_RS12845 WP_083626247.1 2823045..2823467(+) (pilC) [Vibrio panuliri strain JCM 19500]
MSKSFVAQFSRTLATSVSAGLPLLTCLNTAKQNQYPPCYQVALAELYTNTSSGMPLYLAMKRSNLFCEMTLQMVMIGEES
GCLDDMLNRIASLHENEIDDLVEQLGQLIEPLVIVVLSLIVGSIVLAIYLPIFNLMNVMG

Nucleotide


Download         Length: 423 bp        

>NTDB_id=73096 GZK95_RS12845 WP_083626247.1 2823045..2823467(+) (pilC) [Vibrio panuliri strain JCM 19500]
ATGAGCAAGAGCTTTGTCGCTCAGTTTAGCCGGACATTGGCGACCAGTGTTTCGGCAGGGCTACCACTGCTGACTTGCCT
AAACACCGCTAAGCAAAATCAGTATCCTCCATGCTATCAAGTCGCGCTCGCTGAACTATACACAAACACCTCGTCTGGAA
TGCCACTCTACCTTGCCATGAAACGCAGCAATCTCTTTTGCGAAATGACGCTACAAATGGTGATGATCGGCGAGGAATCC
GGATGCTTGGATGATATGCTCAATCGCATTGCCTCTTTGCACGAAAATGAAATAGATGATCTGGTCGAACAGCTAGGTCA
ACTAATTGAACCTCTGGTTATTGTCGTGTTGAGCCTTATCGTAGGGAGCATAGTATTAGCAATCTACTTACCCATCTTTA
ACTTAATGAATGTTATGGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(9-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

55

100

0.55
  pilC Vibrio cholerae strain A1552

52.143

100

0.521
  pilG Neisseria gonorrhoeae MS11

41.606

97.857

0.407
  pilC Acinetobacter baumannii D1279779

41.606

97.857

0.407
  pilC Acinetobacter baylyi ADP1

41.606

97.857

0.407
  pilG Neisseria meningitidis 44/76-A

40.876

97.857

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.146

97.857

0.393
  pilC Legionella pneumophila strain ERS1305867

37.778

96.429

0.364

Multiple sequence alignment