Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N5B57_RS21920 Genome accession   NZ_CP104595
Coordinates   4516688..4517224 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain EC9952     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4511688..4522224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5B57_RS21900 (N5B57_21845) soxR 4513416..4513880 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  N5B57_RS21905 (N5B57_21850) soxS 4513966..4514289 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  N5B57_RS21910 (N5B57_21855) pdeC 4514292..4515878 (-) 1587 WP_000019535.1 c-di-GMP phosphodiesterase PdeC -
  N5B57_RS21915 (N5B57_21860) yjcB 4516308..4516589 (+) 282 WP_001295689.1 YjcB family protein -
  N5B57_RS21920 (N5B57_21865) ssb 4516688..4517224 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  N5B57_RS21925 (N5B57_21870) uvrA 4517478..4520300 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  N5B57_RS21930 (N5B57_21875) yjbR 4520335..4520691 (-) 357 WP_272471672.1 MmcQ/YjbR family DNA-binding protein -
  N5B57_RS21935 (N5B57_21880) yjbQ 4520695..4521111 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  N5B57_RS21940 (N5B57_21885) aphA 4521222..4521935 (-) 714 WP_063120048.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=730925 N5B57_RS21920 WP_000168305.1 4516688..4517224(-) (ssb) [Escherichia coli strain EC9952]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=730925 N5B57_RS21920 WP_000168305.1 4516688..4517224(-) (ssb) [Escherichia coli strain EC9952]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489