Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   GZK95_RS06480 Genome accession   NZ_AP019654
Coordinates   1428131..1428712 (+) Length   193 a.a.
NCBI ID   WP_075716515.1    Uniprot ID   -
Organism   Vibrio panuliri strain JCM 19500     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1423131..1433712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZK95_RS06460 panP 1423473..1425122 (-) 1650 WP_075709428.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  GZK95_RS06465 - 1425340..1425852 (-) 513 WP_075716518.1 hypothetical protein -
  GZK95_RS06470 - 1425919..1426824 (-) 906 WP_075716517.1 lysine exporter LysO family protein -
  GZK95_RS06475 - 1426841..1427761 (-) 921 WP_075716516.1 HDOD domain-containing protein -
  GZK95_RS06480 tfoX 1428131..1428712 (+) 582 WP_075716515.1 TfoX/Sxy family DNA transformation protein Regulator
  GZK95_RS06485 - 1429105..1429734 (+) 630 WP_075716514.1 LysE family translocator -
  GZK95_RS06490 - 1429806..1430054 (+) 249 WP_318630703.1 hypothetical protein -
  GZK95_RS06495 - 1430257..1432140 (+) 1884 WP_075709435.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22276.43 Da        Isoelectric Point: 8.9934

>NTDB_id=73086 GZK95_RS06480 WP_075716515.1 1428131..1428712(+) (tfoX) [Vibrio panuliri strain JCM 19500]
MTEQSFIQYVSKYGDFQKRSMFGGTGLFKDDAMFALLSNEHVFIRGGNNLDADLCALGCEKYRHVKKQTTATVNYYDISH
LFNSRDEKLDVLVKKSIDYSVTQREFKRSSANRRLRDLPNMQLTLERMVKKSGIDDVDEFIELGAAQVFSRVKQTYGSDV
DVKLLWKFAGAIDGVHWKLIQEPRKRQLLESCQ

Nucleotide


Download         Length: 582 bp        

>NTDB_id=73086 GZK95_RS06480 WP_075716515.1 1428131..1428712(+) (tfoX) [Vibrio panuliri strain JCM 19500]
ATGACAGAGCAATCGTTTATTCAATATGTTAGTAAATACGGTGACTTCCAAAAACGTTCAATGTTTGGAGGTACGGGTTT
GTTCAAGGATGACGCAATGTTCGCCCTTTTGAGTAACGAACATGTGTTTATTCGTGGAGGAAATAACTTAGATGCAGACT
TGTGTGCTTTAGGTTGTGAAAAATATCGCCATGTTAAGAAGCAAACTACGGCAACCGTGAACTACTATGACATTAGCCAC
TTGTTCAATTCTCGTGATGAGAAGCTGGATGTATTGGTTAAAAAGTCAATCGATTATTCTGTAACTCAACGAGAGTTCAA
ACGTTCATCTGCTAACCGTCGTTTGCGTGATCTACCAAACATGCAATTGACTCTTGAACGTATGGTTAAAAAGTCGGGCA
TCGATGATGTTGATGAGTTTATCGAACTAGGCGCGGCGCAGGTCTTTTCACGCGTTAAGCAAACGTACGGCAGTGATGTT
GACGTTAAGCTGTTGTGGAAATTTGCTGGCGCGATTGACGGTGTGCATTGGAAACTAATCCAAGAACCACGTAAACGTCA
GTTATTGGAGAGCTGTCAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(9-98)

TfoX C-terminal domain (TfoX_C)

(112-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

69.948

100

0.699
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

69.948

100

0.699
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

69.948

100

0.699
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

69.948

100

0.699
  tfoX Vibrio cholerae strain A1552

69.948

100

0.699
  tfoX Vibrio campbellii strain DS40M4

67.358

100

0.674
  tfoX Vibrio parahaemolyticus RIMD 2210633

66.839

100

0.668
  tfoX Aliivibrio fischeri ES114

57.368

98.446

0.565

Multiple sequence alignment