Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N5O87_RS03635 Genome accession   NZ_CP104582
Coordinates   762513..763004 (+) Length   163 a.a.
NCBI ID   WP_003463262.1    Uniprot ID   A0A1G7PSP6
Organism   Pseudomonas sp. GD03919     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 757513..768004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O87_RS03620 (N5O87_03620) bfr 757627..758091 (+) 465 WP_074858054.1 bacterioferritin -
  N5O87_RS03625 (N5O87_03625) uvrA 758139..760973 (-) 2835 WP_279532106.1 excinuclease ABC subunit UvrA -
  N5O87_RS03630 (N5O87_03630) - 761109..762503 (+) 1395 WP_279532107.1 MFS transporter -
  N5O87_RS03635 (N5O87_03635) ssb 762513..763004 (+) 492 WP_003463262.1 single-stranded DNA-binding protein Machinery gene
  N5O87_RS03640 (N5O87_03640) - 763025..763909 (+) 885 WP_257597800.1 NAD(P)-dependent oxidoreductase -
  N5O87_RS03645 (N5O87_03645) - 763902..764822 (+) 921 WP_279532108.1 NAD-dependent epimerase/dehydratase family protein -
  N5O87_RS03650 (N5O87_03650) - 765034..765696 (-) 663 WP_279532109.1 OmpW/AlkL family protein -
  N5O87_RS03655 (N5O87_03655) - 765890..766663 (+) 774 WP_108233732.1 DUF3450 domain-containing protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18170.27 Da        Isoelectric Point: 5.3412

>NTDB_id=730700 N5O87_RS03635 WP_003463262.1 762513..763004(+) (ssb) [Pseudomonas sp. GD03919]
MARGVNKVILVGTCGQDPETRYLPSGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVALFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPSGDEGGAPRQSRPAPQREPQQAPRQERPAPQQAQPAPDYDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=730700 N5O87_RS03635 WP_003463262.1 762513..763004(+) (ssb) [Pseudomonas sp. GD03919]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGCGGCCAGGACCCGGAAACACGCTACCTGCCCAGCGGCAA
CGCGGTCACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGATAAGCAGACCGGGCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTTGCCCTGTTCGGCAAGGTCGCTGAGATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGGTGTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGTTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGTCGTCCGAGCGGTGATGAAGGCGGTGCTCCGCGCCAGTCGCGTCCGGCCCCGCAGCGTGAGC
CACAACAGGCCCCGCGTCAGGAGCGTCCGGCACCGCAGCAGGCCCAGCCAGCGCCTGACTACGACAGCTTCGATGACGAT
ATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G7PSP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.303

100

0.626
  ssb Glaesserella parasuis strain SC1401

49.171

100

0.546
  ssb Neisseria meningitidis MC58

48.023

100

0.521
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.521