Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | GZI12_RS13635 | Genome accession | NZ_AP019651 |
| Coordinates | 2876754..2877230 (-) | Length | 158 a.a. |
| NCBI ID | WP_162047426.1 | Uniprot ID | - |
| Organism | Vibrio taketomensis strain C4III291 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2871754..2882230
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZI12_RS13620 | cysQ | 2874533..2875360 (-) | 828 | WP_162047424.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| GZI12_RS13625 | nudE | 2875381..2875932 (-) | 552 | WP_162047425.1 | ADP compounds hydrolase NudE | - |
| GZI12_RS13630 | nfuA | 2876075..2876662 (-) | 588 | WP_075652064.1 | Fe-S biogenesis protein NfuA | - |
| GZI12_RS13635 | comF | 2876754..2877230 (-) | 477 | WP_162047426.1 | ComF family protein | Machinery gene |
| GZI12_RS13640 | bioH | 2877537..2878331 (+) | 795 | WP_162047427.1 | pimeloyl-ACP methyl ester esterase BioH | - |
| GZI12_RS13645 | - | 2878463..2878933 (+) | 471 | WP_162047428.1 | ATP-dependent Lon protease | - |
| GZI12_RS13650 | - | 2879010..2881331 (-) | 2322 | WP_162047429.1 | Tex family protein | - |
| GZI12_RS13655 | greB | 2881413..2881889 (-) | 477 | WP_162047430.1 | transcription elongation factor GreB | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17962.73 Da Isoelectric Point: 9.6532
>NTDB_id=73064 GZI12_RS13635 WP_162047426.1 2876754..2877230(-) (comF) [Vibrio taketomensis strain C4III291]
MGDYAPPLSSYVQQFKFARQLHQAELLAELLLLNVEPNVEVITFVPLHWWRQFRRGFNQSEWIARALAKRLGIPCIALFK
RTRATQPQLGMTRSQRHKNLNNAFVINTHIDFNSVAIVDDVVTTGSTVNSLCKLLLDAGVKSVDIYTICRTPEPNGDR
MGDYAPPLSSYVQQFKFARQLHQAELLAELLLLNVEPNVEVITFVPLHWWRQFRRGFNQSEWIARALAKRLGIPCIALFK
RTRATQPQLGMTRSQRHKNLNNAFVINTHIDFNSVAIVDDVVTTGSTVNSLCKLLLDAGVKSVDIYTICRTPEPNGDR
Nucleotide
Download Length: 477 bp
>NTDB_id=73064 GZI12_RS13635 WP_162047426.1 2876754..2877230(-) (comF) [Vibrio taketomensis strain C4III291]
GTGGGTGATTATGCTCCGCCACTTTCTAGTTATGTCCAGCAATTCAAATTTGCTCGTCAATTGCATCAAGCAGAGCTACT
TGCAGAGTTGTTACTGCTCAATGTTGAACCCAACGTTGAAGTCATTACTTTCGTCCCCTTACACTGGTGGCGTCAGTTTA
GGCGGGGGTTTAATCAAAGTGAATGGATAGCGCGCGCCTTAGCAAAAAGGTTAGGCATTCCGTGTATAGCATTATTTAAA
CGTACGCGAGCCACTCAACCGCAGCTGGGTATGACGCGCAGCCAACGACATAAAAATCTCAACAACGCCTTTGTTATCAA
TACGCACATCGATTTTAACTCGGTGGCGATTGTCGATGATGTGGTGACCACCGGTAGTACTGTGAATAGCTTATGCAAAT
TACTGCTTGATGCAGGGGTTAAAAGCGTTGATATTTATACTATATGCCGTACTCCTGAACCAAATGGTGATCGATAA
GTGGGTGATTATGCTCCGCCACTTTCTAGTTATGTCCAGCAATTCAAATTTGCTCGTCAATTGCATCAAGCAGAGCTACT
TGCAGAGTTGTTACTGCTCAATGTTGAACCCAACGTTGAAGTCATTACTTTCGTCCCCTTACACTGGTGGCGTCAGTTTA
GGCGGGGGTTTAATCAAAGTGAATGGATAGCGCGCGCCTTAGCAAAAAGGTTAGGCATTCCGTGTATAGCATTATTTAAA
CGTACGCGAGCCACTCAACCGCAGCTGGGTATGACGCGCAGCCAACGACATAAAAATCTCAACAACGCCTTTGTTATCAA
TACGCACATCGATTTTAACTCGGTGGCGATTGTCGATGATGTGGTGACCACCGGTAGTACTGTGAATAGCTTATGCAAAT
TACTGCTTGATGCAGGGGTTAAAAGCGTTGATATTTATACTATATGCCGTACTCCTGAACCAAATGGTGATCGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Vibrio cholerae strain A1552 |
52.564 |
98.734 |
0.519 |
| comF | Vibrio campbellii strain DS40M4 |
49.359 |
98.734 |
0.487 |
| comF | Haemophilus influenzae 86-028NP |
38.037 |
100 |
0.392 |
| comF | Haemophilus influenzae Rd KW20 |
38.037 |
100 |
0.392 |
| comFC | Legionella pneumophila str. Paris |
38.217 |
99.367 |
0.38 |
| comFC | Legionella pneumophila strain ERS1305867 |
38.961 |
97.468 |
0.38 |