Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   N5O83_RS13415 Genome accession   NZ_CP104579
Coordinates   2764630..2764950 (-) Length   106 a.a.
NCBI ID   WP_003461577.1    Uniprot ID   W6REH9
Organism   Pseudomonas oleovorans strain GD04132     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2759630..2769950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O83_RS13410 (N5O83_13400) recC 2761058..2764471 (-) 3414 WP_279533469.1 exodeoxyribonuclease V subunit gamma -
  N5O83_RS13415 (N5O83_13405) comE1/comEA 2764630..2764950 (-) 321 WP_003461577.1 helix-hairpin-helix domain-containing protein Machinery gene
  N5O83_RS13420 (N5O83_13410) - 2765191..2765493 (-) 303 Protein_2636 transposase -
  N5O83_RS13425 (N5O83_13415) - 2765687..2766361 (-) 675 WP_279533470.1 transmembrane anchor protein -
  N5O83_RS13430 (N5O83_13420) - 2766373..2767110 (-) 738 WP_279533471.1 HupE/UreJ family protein -
  N5O83_RS13435 (N5O83_13425) - 2767157..2767516 (-) 360 WP_104729687.1 hypothetical protein -
  N5O83_RS13440 (N5O83_13430) - 2767631..2767918 (+) 288 WP_074860967.1 metal-sensing transcriptional repressor -
  N5O83_RS13445 (N5O83_13435) - 2767925..2769028 (+) 1104 WP_279533472.1 nickel/cobalt efflux transporter -
  N5O83_RS13450 (N5O83_13440) - 2769030..2769470 (+) 441 WP_279533473.1 DedA family protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11074.38 Da        Isoelectric Point: 4.3085

>NTDB_id=730632 N5O83_RS13415 WP_003461577.1 2764630..2764950(-) (comE1/comEA) [Pseudomonas oleovorans strain GD04132]
MKNYLSSVLFALLASFSFAVSAVDTGNAEAGEATSEQVAQAVTVNLNTADAETLQRELAGIGATKAQAIVAYREAHGSFA
SVDELLEVKGIGEATLNKNRDKLVVD

Nucleotide


Download         Length: 321 bp        

>NTDB_id=730632 N5O83_RS13415 WP_003461577.1 2764630..2764950(-) (comE1/comEA) [Pseudomonas oleovorans strain GD04132]
ATGAAAAACTACCTCTCTTCTGTTCTCTTTGCGCTTCTTGCCTCTTTCTCCTTCGCTGTATCCGCAGTCGACACTGGAAA
TGCCGAGGCTGGCGAAGCGACCTCTGAGCAAGTCGCTCAGGCTGTAACCGTCAATCTCAATACTGCTGATGCAGAGACGC
TCCAGCGTGAGCTGGCGGGTATCGGTGCAACCAAAGCTCAGGCAATCGTGGCCTATCGTGAGGCTCATGGCAGTTTTGCG
TCTGTTGACGAACTGCTTGAGGTCAAGGGTATTGGTGAGGCGACTCTGAATAAGAATCGCGACAAACTGGTAGTCGACTG
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(40-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W6REH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

47.863

100

0.528
  comEA/comE1 Glaesserella parasuis strain SC1401

46.847

100

0.491
  comEA Legionella pneumophila str. Paris

41.414

93.396

0.387
  comEA Legionella pneumophila strain ERS1305867

41.414

93.396

0.387
  comEA Streptococcus thermophilus LMD-9

45.977

82.075

0.377