Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   N5O83_RS04540 Genome accession   NZ_CP104579
Coordinates   966598..967938 (-) Length   446 a.a.
NCBI ID   WP_125873789.1    Uniprot ID   A0A427HT19
Organism   Pseudomonas oleovorans strain GD04132     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 961598..972938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O83_RS04510 (N5O83_04515) - 962340..962894 (-) 555 WP_011912159.1 PilX N-terminal domain-containing pilus assembly protein -
  N5O83_RS04515 (N5O83_04520) - 962891..963586 (-) 696 WP_158234266.1 PilW family protein -
  N5O83_RS04520 (N5O83_04525) pilV 963639..964220 (-) 582 WP_279534466.1 type IV pilus modification protein PilV -
  N5O83_RS04525 (N5O83_04530) - 964229..964765 (-) 537 WP_279534467.1 GspH/FimT family pseudopilin -
  N5O83_RS04530 (N5O83_04535) - 964859..965353 (-) 495 WP_279534468.1 GspH/FimT family pseudopilin -
  N5O83_RS04535 (N5O83_04540) thiO 965412..966524 (+) 1113 WP_279534919.1 glycine oxidase ThiO -
  N5O83_RS04540 (N5O83_04545) pilR 966598..967938 (-) 1341 WP_125873789.1 sigma-54 dependent transcriptional regulator Regulator
  N5O83_RS04545 (N5O83_04550) pilS 967941..969533 (-) 1593 WP_108234142.1 ATP-binding protein Regulator
  N5O83_RS04550 (N5O83_04555) - 969523..969765 (-) 243 WP_003459426.1 PP0621 family protein -
  N5O83_RS04555 (N5O83_04560) - 970091..971083 (-) 993 WP_003459428.1 outer membrane protein assembly factor BamD -
  N5O83_RS04560 (N5O83_04565) rluD 971222..972196 (+) 975 WP_055983812.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N5O83_RS04565 (N5O83_04570) pgeF 972193..972924 (+) 732 WP_279534469.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49836.06 Da        Isoelectric Point: 5.6116

>NTDB_id=730622 N5O83_RS04540 WP_125873789.1 966598..967938(-) (pilR) [Pseudomonas oleovorans strain GD04132]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAINSLKAGAFDFLTKPVDLGRLRELVATALRIRSPEGEETPVDSRLLGDSPPMKSLRKQIQKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRAEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLADVM
LARLADGTGLAAAKLHPDALEKLKNYRFPGNVRELENMLERAYTLCEDDQITPSDLRLADASSPGNEGGETSLAQIDNLE
DYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=730622 N5O83_RS04540 WP_125873789.1 966598..967938(-) (pilR) [Pseudomonas oleovorans strain GD04132]
ATGAACCGTCAGAGAGCCCTGATCGTCGACGACGAACCCGATATCCGTGAGCTGCTGGAAATCACCCTCGGACGCATGAA
GCTGGACACCCGCAGCGCGCGCAACGTCAAGGAAGCGCGTGAATGGCTGGCGCGCGAGCCATTCGATCTGTGCCTGACCG
ATATGCGCCTGCCCGATGGCACCGGCCTGGATCTGGTGCAGCACATTCAACAACGTCATCCACAGGTACCCGTGGCGATG
ATCACCGCCTACGGCAGCCTGGACACCGCGATCAACTCGCTCAAAGCCGGCGCCTTCGACTTTCTCACCAAACCGGTGGA
CCTCGGTCGCCTGCGCGAACTGGTCGCCACCGCCCTGCGCATTCGCTCCCCCGAAGGCGAGGAAACCCCGGTCGACAGCC
GCCTGCTCGGCGACTCGCCACCGATGAAATCGCTGCGCAAGCAGATCCAGAAACTCTCGCGCAGCCAGGCGCCGGTCTAT
ATCAGCGGCGAGTCGGGCAGCGGCAAGGAACTGGTAGCGCGCCTGATTCACGAGCAGGGGCCGCGCGCCGAACAGCCGTT
CGTACCGGTCAACTGCGGCGCTATTCCCTCGGAGCTGATGGAGAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCATCGAAGACAAGCAGGGGCTGTTCCAGGCGGCCAATGGCGGCACCCTGTTCCTCGACGAGGTCGCCGACCTGCCG
CTGCCCATGCAGGTGAAACTGCTGCGTGCGATTCAGGAAAAAGCCGTGCGCGCAGTCGGCGGCCAGCAAGAAGTAGTTGT
CGATGTGCGCATTCTCTGCGCCACCCACAAGGACCTTGCCGCCGAAGTCGCTGCTGGCCGCTTCCGTCAGGATCTCTACT
ACCGCCTCAACGTCATCGAACTGCGCGTCCCGCCGCTGCGCGAGCGGCGCGAAGATATAGCCCAATTGGCTGACGTGATG
CTCGCGCGCCTGGCCGATGGCACCGGCCTGGCCGCCGCCAAGTTGCACCCCGACGCACTGGAAAAACTGAAGAATTACCG
CTTCCCCGGCAACGTGCGCGAGCTGGAAAACATGCTCGAACGCGCCTACACCCTCTGCGAAGACGATCAGATCACGCCAA
GCGACCTGCGCCTGGCCGATGCCAGCAGCCCTGGCAACGAAGGCGGCGAAACCAGCCTGGCGCAGATCGACAACCTCGAG
GACTACCTCGAGGACATCGAACGCAAACTGATCATGCAGGCACTGGAAGAAACCCGCTGGAACCGCACGGCGGCGGCGCA
ACGCCTGGGCCTGACCTTCCGCTCGATGCGCTATCGCCTGAAGAAGCTGGGTATCGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A427HT19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.565

100

0.886
  pilR Acinetobacter baumannii strain A118

49.348

100

0.509
  luxO Vibrio cholerae strain A1552

38.117

100

0.381