Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   N5O83_RS04545 Genome accession   NZ_CP104579
Coordinates   967941..969533 (-) Length   530 a.a.
NCBI ID   WP_108234142.1    Uniprot ID   A0AA42QC28
Organism   Pseudomonas oleovorans strain GD04132     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 962941..974533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O83_RS04520 (N5O83_04525) pilV 963639..964220 (-) 582 WP_279534466.1 type IV pilus modification protein PilV -
  N5O83_RS04525 (N5O83_04530) - 964229..964765 (-) 537 WP_279534467.1 GspH/FimT family pseudopilin -
  N5O83_RS04530 (N5O83_04535) - 964859..965353 (-) 495 WP_279534468.1 GspH/FimT family pseudopilin -
  N5O83_RS04535 (N5O83_04540) thiO 965412..966524 (+) 1113 WP_279534919.1 glycine oxidase ThiO -
  N5O83_RS04540 (N5O83_04545) pilR 966598..967938 (-) 1341 WP_125873789.1 sigma-54 dependent transcriptional regulator Regulator
  N5O83_RS04545 (N5O83_04550) pilS 967941..969533 (-) 1593 WP_108234142.1 ATP-binding protein Regulator
  N5O83_RS04550 (N5O83_04555) - 969523..969765 (-) 243 WP_003459426.1 PP0621 family protein -
  N5O83_RS04555 (N5O83_04560) - 970091..971083 (-) 993 WP_003459428.1 outer membrane protein assembly factor BamD -
  N5O83_RS04560 (N5O83_04565) rluD 971222..972196 (+) 975 WP_055983812.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N5O83_RS04565 (N5O83_04570) pgeF 972193..972924 (+) 732 WP_279534469.1 peptidoglycan editing factor PgeF -
  N5O83_RS04570 (N5O83_04575) - 973092..973682 (+) 591 WP_279534470.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59060.22 Da        Isoelectric Point: 8.1902

>NTDB_id=730623 N5O83_RS04545 WP_108234142.1 967941..969533(-) (pilS) [Pseudomonas oleovorans strain GD04132]
MTADTSVQNSTQGQRILRLYHFYRLTIGLALILLISSNLDEQLLDVVHIELFRTGSWVYLILNIFIAVLVQKPKHLMQLF
SLALVDVIFLSALFYAAGGTPSGIGNLLVVAVAIANILLRGRVGLLIAAIAAIALIYLTFYLSLSRPAAAAQYVQAGALG
ALCFAGALFIQGITRRLQISETLAEKRAADVANLEELNAQILQRMRTGILVLDTQHRVLLANQGATQLLGRGELTGKIID
PHCPELVKRLQQWLHNPTLRPESLQAQVDGPVLQPSFISLQRDDQQHILVFLDDISQIAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLQGPDQRLAQIIQDHSKRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSAPAD
RQLHLETQGGSLQTRMDPHQLNQVLTNLVQNGLRYSAQKHRLGQVWLRLFRDAESDLPVLQILDDGPGVPPEQEPHIFEP
FYTTENKGTGLGLYISRELCESNQARLDYKPREGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=730623 N5O83_RS04545 WP_108234142.1 967941..969533(-) (pilS) [Pseudomonas oleovorans strain GD04132]
GTGACCGCTGACACCAGCGTACAGAACAGCACACAAGGGCAGCGCATCCTCAGGCTCTATCACTTCTATCGCCTGACCAT
CGGCCTGGCGCTGATCCTGCTGATCTCCAGCAACCTCGACGAGCAGTTGCTGGATGTCGTGCATATCGAGCTGTTTCGCA
CCGGCAGCTGGGTTTACCTGATCCTCAACATCTTCATCGCCGTACTGGTGCAGAAACCCAAGCACCTGATGCAGCTGTTC
AGCCTGGCGCTGGTCGACGTGATCTTTCTCTCGGCCCTGTTCTATGCAGCGGGCGGCACGCCCAGCGGCATCGGCAACCT
GCTGGTGGTCGCCGTAGCGATCGCCAACATTCTGCTGCGCGGCCGCGTTGGCCTGTTGATCGCCGCCATCGCCGCGATAG
CACTGATCTACCTGACCTTCTACCTCAGCCTCAGCCGCCCGGCTGCCGCCGCCCAGTACGTGCAGGCTGGCGCCCTCGGC
GCGCTGTGTTTCGCTGGCGCGTTATTCATCCAGGGCATCACCCGACGCCTGCAGATCAGTGAAACCCTGGCCGAAAAGCG
TGCAGCCGACGTAGCCAACCTCGAAGAGCTCAATGCGCAGATCCTGCAACGCATGCGCACCGGCATACTGGTGCTCGACA
CCCAACACCGAGTGCTGCTGGCCAACCAGGGGGCAACGCAGCTACTGGGCCGTGGCGAACTGACCGGCAAGATCATCGAC
CCACACTGCCCCGAGCTGGTCAAACGCCTGCAGCAGTGGCTGCACAACCCGACCCTGCGGCCGGAAAGCCTGCAGGCGCA
GGTCGATGGCCCGGTGTTGCAACCGAGCTTCATTTCCCTCCAACGCGACGACCAGCAACATATTCTGGTGTTTCTCGATG
ACATCTCGCAGATCGCCCAGCAGGCCCAGCAACTCAAGCTGGCCTCGCTGGGCCGCCTGACCGCCGGCATCGCCCACGAA
ATTCGCAACCCGCTCGGCGCCATCAGCCATGCCGCGCAGTTGTTGCAGGAATCGGAAGACCTGCAAGGCCCGGATCAGCG
CCTGGCGCAGATCATTCAGGATCACTCCAAACGCATGAACCTGGTGATCGAGAACGTCCTGCAGCTCTCGCGCCGGCGCC
AGGCCGAACCGCAACTGCTCGACCTGAAATACTGGCTACACCGCTTCGCCAGCGAATTTCGCAGCTCGGCACCGGCCGAC
CGGCAGCTCCATCTGGAAACCCAGGGCGGTAGCCTGCAGACGCGCATGGATCCACACCAGTTGAACCAGGTACTGACCAA
TCTGGTACAAAACGGCCTGCGCTACAGCGCCCAGAAGCACCGGCTCGGCCAGGTCTGGCTGCGCCTGTTCCGCGATGCGG
AAAGCGACCTGCCGGTACTGCAGATTCTCGACGACGGCCCCGGCGTGCCGCCCGAGCAGGAACCGCACATCTTCGAGCCC
TTCTACACCACGGAAAACAAGGGCACCGGCCTTGGCTTGTACATCTCGCGCGAGCTGTGCGAGAGCAACCAGGCTCGCCT
CGACTATAAACCTCGTGAAGGTGGCGGCAGTTGCTTTCGCATCACCTTCGCCCATCCGCGCAAACTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

PAS domain (PAS_8)

(201-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.925

100

0.679