Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N4261_RS24930 Genome accession   NZ_CP104562
Coordinates   6028359..6028913 (-) Length   184 a.a.
NCBI ID   WP_261757937.1    Uniprot ID   -
Organism   Roseateles amylovorans strain BIM B-1768     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6023359..6033913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4261_RS24920 (N4261_24945) - 6023623..6026205 (-) 2583 WP_261757936.1 hypothetical protein -
  N4261_RS24925 (N4261_24950) - 6026780..6027928 (-) 1149 WP_261760844.1 nitronate monooxygenase family protein -
  N4261_RS24930 (N4261_24955) ssb 6028359..6028913 (-) 555 WP_261757937.1 single-stranded DNA-binding protein Machinery gene
  N4261_RS24935 (N4261_24960) - 6029080..6030048 (-) 969 WP_261757938.1 sensor domain-containing diguanylate cyclase -
  N4261_RS24940 (N4261_24965) recQ 6030155..6032026 (+) 1872 WP_261757939.1 DNA helicase RecQ -
  N4261_RS24945 (N4261_24970) - 6032242..6032511 (-) 270 WP_261757940.1 hypothetical protein -
  N4261_RS24950 (N4261_24975) - 6032943..6033197 (-) 255 WP_261757941.1 hypothetical protein -
  N4261_RS24955 (N4261_24980) - 6033499..6033759 (-) 261 WP_261757942.1 hypothetical protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19817.85 Da        Isoelectric Point: 5.4293

>NTDB_id=730602 N4261_RS24930 WP_261757937.1 6028359..6028913(-) (ssb) [Roseateles amylovorans strain BIM B-1768]
MASVNKVIILGNLGRDPELRYTPSGSAVCNVSIATTRNWKSREGGERQEETEWHRVVFYDRLAEIAGEYLKKGRPVYVEG
RLKTRKWQDKEGKDNYTTEIIAEQMQLLGGRDGGDEMGGGGGGGGYSRERSAERSGGGGGGSGRDSGDFDAPRAPAPRAA
PAPRQAPAPKPATGFDDMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=730602 N4261_RS24930 WP_261757937.1 6028359..6028913(-) (ssb) [Roseateles amylovorans strain BIM B-1768]
ATGGCCTCGGTCAACAAAGTCATCATTCTCGGCAACCTGGGTCGTGATCCCGAACTGCGCTACACCCCAAGCGGCAGCGC
GGTGTGCAACGTCAGCATTGCCACGACCCGCAACTGGAAAAGCCGCGAAGGTGGTGAGCGCCAGGAAGAAACCGAATGGC
ATCGCGTGGTGTTCTACGACCGCCTGGCCGAGATCGCCGGCGAGTACCTGAAGAAGGGCCGTCCGGTGTATGTGGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGAAGGCAAGGACAACTACACCACTGAAATCATCGCGGAGCAGATGCAACT
GCTGGGCGGCCGTGACGGTGGTGATGAGATGGGCGGTGGCGGTGGTGGCGGCGGTTACAGCCGAGAGCGCAGCGCCGAAC
GCAGTGGCGGCGGCGGTGGCGGTAGCGGCCGTGACAGCGGTGATTTCGACGCGCCGCGCGCACCCGCCCCTCGGGCTGCA
CCGGCTCCGCGCCAGGCGCCCGCACCGAAGCCGGCAACCGGTTTCGACGACATGGATGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.876

100

0.484
  ssb Glaesserella parasuis strain SC1401

47.283

100

0.473
  ssb Neisseria gonorrhoeae MS11

45.55

100

0.473
  ssb Neisseria meningitidis MC58

46.486

100

0.467