Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   N5C46_RS14795 Genome accession   NZ_CP104558
Coordinates   2857750..2858265 (+) Length   171 a.a.
NCBI ID   WP_034764778.1    Uniprot ID   A0A5D4UC39
Organism   Rossellomorea vietnamensis strain RL-WG62     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2852750..2863265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5C46_RS14765 (N5C46_14765) - 2853099..2853812 (+) 714 WP_229596306.1 DUF554 domain-containing protein -
  N5C46_RS14770 (N5C46_14770) yyaC 2853855..2854475 (-) 621 WP_261749172.1 spore protease YyaC -
  N5C46_RS14775 (N5C46_14775) - 2854725..2855651 (+) 927 WP_261749173.1 mechanosensitive ion channel family protein -
  N5C46_RS14780 (N5C46_14780) - 2855665..2855865 (+) 201 WP_034764770.1 DUF951 domain-containing protein -
  N5C46_RS14785 (N5C46_14785) ychF 2856118..2857218 (+) 1101 WP_226677726.1 redox-regulated ATPase YchF -
  N5C46_RS14790 (N5C46_14790) rpsF 2857383..2857670 (+) 288 WP_034764776.1 30S ribosomal protein S6 -
  N5C46_RS14795 (N5C46_14795) ssbA 2857750..2858265 (+) 516 WP_034764778.1 single-stranded DNA-binding protein Machinery gene
  N5C46_RS14800 (N5C46_14800) rpsR 2858307..2858543 (+) 237 WP_034764780.1 30S ribosomal protein S18 -
  N5C46_RS14805 (N5C46_14805) - 2859330..2861390 (+) 2061 WP_261749174.1 methyl-accepting chemotaxis protein -
  N5C46_RS14810 (N5C46_14810) - 2861692..2862615 (+) 924 WP_261749175.1 YybS family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18962.70 Da        Isoelectric Point: 4.8013

>NTDB_id=730519 N5C46_RS14795 WP_034764778.1 2857750..2858265(+) (ssbA) [Rossellomorea vietnamensis strain RL-WG62]
MMNRVVLVGRLTKDPELKYTPSGVAVASFTLAVNRSFTNQSGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRIQTR
NFEGQDGRRVFMTEVVAESVQFLEPRSANQGDRGGSPGYSGGGQRDQGNPYSQNQNQQRNNNNNNNYTRVDEDPFANDGQ
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=730519 N5C46_RS14795 WP_034764778.1 2857750..2858265(+) (ssbA) [Rossellomorea vietnamensis strain RL-WG62]
ATGATGAACCGAGTTGTATTAGTAGGGCGTTTAACCAAAGACCCTGAATTAAAATATACTCCAAGTGGAGTGGCTGTTGC
TTCGTTTACACTGGCTGTCAATCGTAGTTTTACGAACCAATCAGGAGAACGGGAAGCAGATTTTATTAACTGTGTTGTAT
GGCGTCGCCCTGCAGAGAATGTAGCAAACTTTCTTAAAAAAGGCAGCTTAGCTGGCGTTGACGGTCGCATTCAAACACGT
AATTTCGAAGGACAGGATGGACGCCGTGTGTTTATGACGGAAGTTGTAGCAGAAAGCGTTCAGTTCTTAGAGCCGCGTAG
TGCGAATCAAGGCGATCGTGGAGGAAGTCCGGGCTATTCGGGTGGAGGTCAGCGTGACCAAGGAAATCCGTATAGTCAGA
ATCAGAATCAACAACGCAACAACAATAATAACAACAACTATACACGTGTAGATGAGGATCCATTTGCAAATGACGGTCAG
CCGATCGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4UC39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.75

100

0.708
  ssb Latilactobacillus sakei subsp. sakei 23K

56.18

100

0.585
  ssb Glaesserella parasuis strain SC1401

35.754

100

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.988

0.374