Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   N5E84_RS14800 Genome accession   NZ_CP104554
Coordinates   3175002..3175523 (+) Length   173 a.a.
NCBI ID   WP_013855888.1    Uniprot ID   -
Organism   Vibrio sp. J502     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3170002..3180523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5E84_RS14780 (N5E84_14780) - 3170179..3172677 (-) 2499 WP_019282439.1 penicillin-binding protein 1A -
  N5E84_RS14785 (N5E84_14785) pilM 3172827..3173837 (+) 1011 WP_019282438.1 type IV pilus assembly protein PilM Machinery gene
  N5E84_RS14790 (N5E84_14790) pilN 3173827..3174429 (+) 603 WP_017047271.1 PilN domain-containing protein Machinery gene
  N5E84_RS14795 (N5E84_14795) pilO 3174422..3175015 (+) 594 WP_013855887.1 type 4a pilus biogenesis protein PilO Machinery gene
  N5E84_RS14800 (N5E84_14800) pilP 3175002..3175523 (+) 522 WP_013855888.1 pilus assembly protein PilP Machinery gene
  N5E84_RS14805 (N5E84_14805) pilQ 3175577..3177262 (+) 1686 WP_370685857.1 type IV pilus secretin PilQ Machinery gene
  N5E84_RS14810 (N5E84_14810) aroK 3177449..3177970 (+) 522 WP_010317691.1 shikimate kinase AroK -
  N5E84_RS14815 (N5E84_14815) aroB 3177994..3179082 (+) 1089 WP_029388273.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19203.29 Da        Isoelectric Point: 10.2262

>NTDB_id=730460 N5E84_RS14800 WP_013855888.1 3175002..3175523(+) (pilP) [Vibrio sp. J502]
MKNNNLLLMVLFSTSVLVGCKANQDSLKVYVEQVEGQARKEVSKLKPIIQFEVAHYAQHESREPFVLPKEAIVQNQPVVK
ADCWQPPARSKNGQLERYPLNQLRLKGVMSSGGAVSALVQTPQGKVVNVKAGQYLGLNHGKVTRVNSNYLLINETLPDGL
GCWNQRNVKLALK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=730460 N5E84_RS14800 WP_013855888.1 3175002..3175523(+) (pilP) [Vibrio sp. J502]
ATGAAAAACAATAATCTGCTGCTGATGGTGCTGTTTAGTACCAGTGTATTGGTTGGTTGTAAAGCTAATCAAGATTCATT
GAAGGTTTATGTGGAGCAGGTTGAGGGGCAAGCACGCAAAGAAGTCTCCAAATTAAAACCCATTATTCAATTTGAAGTTG
CTCATTATGCGCAACATGAATCCCGCGAACCTTTTGTGCTGCCTAAAGAAGCGATTGTACAAAATCAGCCTGTAGTGAAG
GCAGACTGCTGGCAACCTCCGGCTCGCAGTAAAAATGGCCAGCTAGAGCGCTATCCGCTTAATCAACTGCGATTAAAAGG
CGTGATGAGTAGCGGGGGCGCGGTATCGGCATTAGTGCAAACGCCCCAAGGCAAGGTCGTCAACGTGAAAGCGGGACAAT
ATTTAGGTTTGAATCACGGCAAAGTTACTCGAGTTAATTCCAATTACCTGCTGATCAATGAAACCTTGCCAGACGGCTTA
GGTTGTTGGAATCAACGTAACGTCAAATTGGCTCTGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

76.301

100

0.763
  pilP Vibrio campbellii strain DS40M4

56.647

100

0.566