Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   N5E84_RS07020 Genome accession   NZ_CP104554
Coordinates   1504569..1505162 (-) Length   197 a.a.
NCBI ID   WP_013857112.1    Uniprot ID   -
Organism   Vibrio sp. J502     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1499569..1510162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5E84_RS07000 (N5E84_07000) - 1499862..1501121 (-) 1260 WP_019281974.1 DUF945 family protein -
  N5E84_RS07005 (N5E84_07005) - 1501296..1503221 (+) 1926 WP_206499660.1 ATP-binding protein -
  N5E84_RS07010 (N5E84_07010) - 1503252..1503749 (+) 498 WP_026028033.1 response regulator -
  N5E84_RS07015 (N5E84_07015) - 1503932..1504480 (+) 549 WP_026028034.1 hypothetical protein -
  N5E84_RS07020 (N5E84_07020) tfoX 1504569..1505162 (-) 594 WP_013857112.1 TfoX/Sxy family DNA transformation protein Regulator
  N5E84_RS07025 (N5E84_07025) - 1505533..1506453 (+) 921 WP_026028826.1 HDOD domain-containing protein -
  N5E84_RS07030 (N5E84_07030) - 1506477..1507382 (+) 906 WP_017047741.1 lysine exporter LysO family protein -
  N5E84_RS07035 (N5E84_07035) - 1507469..1507981 (+) 513 WP_013857115.1 hypothetical protein -
  N5E84_RS07040 (N5E84_07040) panP 1508081..1509724 (+) 1644 WP_019281975.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22823.37 Da        Isoelectric Point: 9.6775

>NTDB_id=730429 N5E84_RS07020 WP_013857112.1 1504569..1505162(-) (tfoX) [Vibrio sp. J502]
MDMIEHAFFNYVIKFGAFQKRSMFGGVGLFQKEAMYSLISEESVFIRGGEELDDALTKLGCEKYKHVKKQTTATVNYYDI
TELFVSNHESLDTIIERSIRYSVEQRSFQKSSASRRLRDLPNMQLTLERMVKKAGINDVETFMRLGAPTIFSKVRKTYGS
DVDVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCSLR

Nucleotide


Download         Length: 594 bp        

>NTDB_id=730429 N5E84_RS07020 WP_013857112.1 1504569..1505162(-) (tfoX) [Vibrio sp. J502]
ATGGATATGATTGAGCATGCATTTTTCAATTACGTTATTAAATTTGGCGCATTTCAAAAGCGTTCAATGTTTGGCGGTGT
TGGGCTTTTCCAAAAAGAAGCGATGTATTCACTGATTAGTGAAGAGTCTGTTTTTATTCGTGGAGGTGAAGAGCTCGATG
ATGCACTCACAAAATTAGGCTGCGAAAAATACAAACACGTTAAAAAGCAGACTACAGCAACCGTTAATTATTATGATATT
ACTGAGCTTTTTGTGAGCAATCATGAGAGCCTAGATACGATCATTGAACGTTCCATTCGCTATTCTGTTGAGCAACGTAG
TTTTCAAAAATCCTCTGCAAGCCGTCGACTACGTGATTTACCAAACATGCAGTTAACGTTAGAGCGTATGGTTAAAAAAG
CGGGCATCAATGATGTGGAAACGTTCATGCGCTTAGGTGCTCCTACGATATTTTCTAAAGTGAGAAAAACGTACGGTAGT
GACGTCGATGTAAAACTACTGTGGAAGTTTGCTGGTGCGATCGAAGGTATTCATTGGAAATTGCTGCAAGAGCCTCGCAA
GCGTCAATTATTAGAAAGCTGCTCATTACGCTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(13-100)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

78.462

98.985

0.777
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

78.462

98.985

0.777
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

78.462

98.985

0.777
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

78.462

98.985

0.777
  tfoX Vibrio cholerae strain A1552

78.462

98.985

0.777
  tfoX Vibrio campbellii strain DS40M4

68.041

98.477

0.67
  tfoX Vibrio parahaemolyticus RIMD 2210633

65.979

98.477

0.65
  tfoX Aliivibrio fischeri ES114

58.247

98.477

0.574