Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N5O73_RS21375 Genome accession   NZ_CP104526
Coordinates   4386153..4386689 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain E8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4373876..4411590 4386153..4386689 within 0


Gene organization within MGE regions


Location: 4373876..4411590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O73_RS21340 (N5O73_21345) yjcB 4373876..4374157 (+) 282 WP_001295689.1 YjcB family protein -
  N5O73_RS21345 (N5O73_21350) - 4374563..4375384 (+) 822 WP_001272931.1 abortive infection system antitoxin AbiGi family protein -
  N5O73_RS21350 (N5O73_21355) avs4 4375922..4380685 (-) 4764 WP_261245867.1 AVAST type 4 anti-phage nuclease Avs4 -
  N5O73_RS21355 (N5O73_21360) - 4380760..4381179 (-) 420 WP_001062124.1 hypothetical protein -
  N5O73_RS21360 (N5O73_21365) - 4381172..4383205 (-) 2034 WP_000807724.1 hypothetical protein -
  N5O73_RS21365 (N5O73_21370) - 4383198..4384760 (-) 1563 WP_021571019.1 site-specific integrase -
  N5O73_RS21370 (N5O73_21375) - 4384747..4385994 (-) 1248 WP_000654660.1 tyrosine-type recombinase/integrase -
  N5O73_RS21375 (N5O73_21380) ssb 4386153..4386689 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  N5O73_RS21380 (N5O73_21385) uvrA 4386943..4389765 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  N5O73_RS21385 (N5O73_21390) yjbR 4389800..4390156 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  N5O73_RS21390 (N5O73_21395) yjbQ 4390160..4390576 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  N5O73_RS21395 (N5O73_21400) aphA 4390687..4391400 (-) 714 WP_001226928.1 acid phosphatase AphA -
  N5O73_RS21400 (N5O73_21405) - 4391871..4392991 (+) 1121 WP_087451024.1 IS3-like element ISSen4 family transposase -
  N5O73_RS21405 (N5O73_21410) yjbS 4393027..4393230 (+) 204 WP_001321562.1 protein YjbS -
  N5O73_RS21410 (N5O73_21415) tyrB 4393732..4394925 (-) 1194 WP_261245871.1 aromatic amino acid transaminase -
  N5O73_RS21415 (N5O73_21420) alr 4395178..4396257 (-) 1080 WP_001147328.1 alanine racemase -
  N5O73_RS21420 (N5O73_21425) dnaB 4396310..4397725 (-) 1416 WP_000918363.1 replicative DNA helicase -
  N5O73_RS21425 (N5O73_21430) qorA 4397808..4398791 (+) 984 WP_000235509.1 quinone oxidoreductase -
  N5O73_RS21430 (N5O73_21435) pspG 4398957..4399199 (-) 243 WP_000891404.1 envelope stress response protein PspG -
  N5O73_RS21435 (N5O73_21440) dusA 4399333..4400370 (-) 1038 WP_001329186.1 tRNA dihydrouridine(20/20a) synthase DusA -
  N5O73_RS21440 (N5O73_21445) - 4400733..4401718 (-) 986 Protein_4216 DUF2713 domain-containing protein -
  N5O73_RS21445 (N5O73_21450) zur 4402036..4402551 (+) 516 WP_001295691.1 zinc uptake transcriptional repressor Zur -
  N5O73_RS21450 (N5O73_21455) yjbJ 4402593..4402802 (-) 210 WP_001030593.1 CsbD family protein -
  N5O73_RS21455 (N5O73_21460) dinF 4402918..4404243 (-) 1326 WP_001301116.1 MATE family efflux transporter DinF -
  N5O73_RS21460 (N5O73_21465) lexA 4404316..4404924 (-) 609 WP_000646078.1 transcriptional repressor LexA -
  N5O73_RS21465 (N5O73_21470) dgkA 4405034..4405402 (-) 369 WP_000002907.1 diacylglycerol kinase -
  N5O73_RS21470 (N5O73_21475) plsB 4405573..4407996 (+) 2424 WP_000017354.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  N5O73_RS21475 (N5O73_21480) ubiA 4408151..4409023 (-) 873 WP_000455227.1 4-hydroxybenzoate octaprenyltransferase -
  N5O73_RS21480 (N5O73_21485) ubiC 4409036..4409533 (-) 498 WP_001295693.1 chorismate lyase -
  N5O73_RS21485 (N5O73_21490) - 4409756..4411336 (-) 1581 Protein_4225 SopA family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=730232 N5O73_RS21375 WP_000168305.1 4386153..4386689(-) (ssb) [Escherichia coli strain E8]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=730232 N5O73_RS21375 WP_000168305.1 4386153..4386689(-) (ssb) [Escherichia coli strain E8]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489