Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N4S13_RS00040 Genome accession   NZ_CP104392
Coordinates   9277..9783 (+) Length   168 a.a.
NCBI ID   WP_010747413.1    Uniprot ID   A0AAP5KKP5
Organism   Enterococcus raffinosus strain HG-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4277..14783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4S13_RS00025 (N4S13_00025) gyrB 4282..6231 (+) 1950 WP_028020630.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  N4S13_RS00030 (N4S13_00030) gyrA 6246..8750 (+) 2505 WP_010747414.1 DNA gyrase subunit A -
  N4S13_RS00035 (N4S13_00035) rpsF 8930..9232 (+) 303 WP_010742561.1 30S ribosomal protein S6 -
  N4S13_RS00040 (N4S13_00040) ssb 9277..9783 (+) 507 WP_010747413.1 single-stranded DNA-binding protein Machinery gene
  N4S13_RS00045 (N4S13_00045) rpsR 9807..10040 (+) 234 WP_010747412.1 30S ribosomal protein S18 -
  N4S13_RS00050 (N4S13_00050) - 10230..11537 (-) 1308 WP_010743765.1 ISL3 family transposase -
  N4S13_RS00055 (N4S13_00055) - 11646..12950 (-) 1305 WP_260711441.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18719.32 Da        Isoelectric Point: 4.5909

>NTDB_id=729463 N4S13_RS00040 WP_010747413.1 9277..9783(+) (ssb) [Enterococcus raffinosus strain HG-5]
MINNVVLVGRLTKDPDLRYTANGTGVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
NYENQQGQRVYVTEVVAENFQLLESRTASEQRQQNPSSDDSFQGGGNNFNNNYNQSSQSAKNTMPDFDRDSDPFSGSSID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=729463 N4S13_RS00040 WP_010747413.1 9277..9783(+) (ssb) [Enterococcus raffinosus strain HG-5]
TTGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTATACAGCAAATGGGACAGGTGTTGC
AACGTTTACTTTAGCGGTGAATCGTAATTTTACGAATCAAAGCGGTAATCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGGAAATCAGCTGAAACTTTAGCTAATTATGCGCGTAAGGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACACGA
AATTATGAAAATCAGCAAGGACAACGGGTCTATGTGACAGAAGTTGTTGCTGAAAATTTCCAATTACTGGAATCTCGTAC
TGCAAGTGAACAACGTCAGCAGAATCCAAGTTCTGATGATAGCTTCCAAGGCGGGGGAAATAATTTTAACAACAATTATA
ATCAATCCTCTCAGTCAGCTAAGAACACTATGCCTGACTTCGATAGAGATTCAGATCCATTTAGTGGGTCCTCCATCGAC
ATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.674

100

0.643
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.062

100

0.601
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

63.095

0.381
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.261

70.833

0.363