Detailed information NTG0729263

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: N5B55_RS13340
• Genome accession: NZ_CP104381
• Coordinates: 2759732..2760613 (+)
• Length: 293 a.a.
• NCBI ID: WP_304538420.1
• Uniprot ID: -
• Organism: Ralstonia pickettii strain MCR
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2754732..2765613

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N5B55_RS13325 (N5B55_13330)	-	2755165..2756439 (+)	1275	WP_178961058.1	HlyC/CorC family transporter	-
N5B55_RS13330 (N5B55_13335)	pilB	2756698..2758425 (+)	1728	WP_154208977.1	type IV-A pilus assembly ATPase PilB	Machinery gene
N5B55_RS13335 (N5B55_13340)	pilG	2758470..2759732 (+)	1263	WP_304538419.1	type II secretion system F family protein	Machinery gene
N5B55_RS13340 (N5B55_13345)	pilD	2759732..2760613 (+)	882	WP_304538420.1	A24 family peptidase	Machinery gene
N5B55_RS13345 (N5B55_13350)	coaE	2760627..2761241 (+)	615	WP_009241592.1	dephospho-CoA kinase	-
N5B55_RS13350 (N5B55_13355)	zapD	2761377..2762135 (+)	759	WP_009241593.1	cell division protein ZapD	-
N5B55_RS13355 (N5B55_13360)	-	2762144..2762347 (+)	204	WP_024972078.1	DNA gyrase inhibitor YacG	-
N5B55_RS13360 (N5B55_13365)	-	2762340..2762801 (-)	462	WP_369812407.1	NUDIX domain-containing protein	-
N5B55_RS13365 (N5B55_13370)	-	2762779..2763663 (-)	885	WP_009241596.1	ATP-binding protein	-
N5B55_RS13370 (N5B55_13375)	argJ	2763680..2764909 (-)	1230	WP_304538424.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31714.77 Da
• Isoelectric Point: 7.2990

>NTDB_id=729263 N5B55_RS13340 WP_304538420.1 2759732..2760613(+) (pilD) [Ralstonia pickettii strain MCR]
MPELFVIPTLAQLPAWFVIATGGLVGLLVGSFLNVVIHRLPRMIEREEANYIAELREEPLPHPEAYNLIVPRSACPSCGH
QIKAIENIPVLSWLALRGRCSACKTPISWRYPAVELVTGLLTAACLWHFGPTWVAVASAVLLWFLIAGTMIDADTQLLPD
AITQPLLWLGLGVNLFGMFTHLQDAVIGAMAGYLFLWSIYWAYKLLRGREGMGYGDFKLMAALGAWFGWQALPLLVLLSS
VVGLVFGLVRIARGAKSESPFSFGPFIAGAGVIALLAGPQLLVMAGLGPLLAP

Nucleotide

• Length: 882 bp

>NTDB_id=729263 N5B55_RS13340 WP_304538420.1 2759732..2760613(+) (pilD) [Ralstonia pickettii strain MCR]
ATGCCGGAGTTGTTTGTCATCCCCACGCTGGCGCAATTACCGGCGTGGTTTGTGATTGCGACCGGCGGGCTTGTCGGCTT
GCTGGTCGGCAGCTTTCTCAACGTGGTGATTCACCGCCTGCCACGCATGATCGAGCGGGAGGAAGCCAACTATATTGCCG
AGTTGCGCGAAGAACCGTTGCCTCACCCGGAGGCATACAACCTGATCGTGCCGCGCTCGGCGTGCCCGTCGTGCGGCCAT
CAGATCAAGGCGATCGAAAACATCCCCGTGCTGAGCTGGCTTGCGCTGCGTGGCCGTTGCAGCGCGTGCAAAACGCCCAT
CTCTTGGCGCTATCCCGCTGTGGAACTGGTCACCGGTCTGCTGACGGCGGCCTGCCTTTGGCACTTCGGCCCCACGTGGG
TAGCGGTCGCATCGGCGGTGCTGCTGTGGTTCCTGATCGCCGGCACAATGATCGACGCCGACACGCAGCTGTTGCCCGAC
GCGATCACCCAGCCGCTGCTCTGGCTGGGGCTGGGCGTGAACCTGTTTGGCATGTTCACGCACCTGCAGGATGCGGTGAT
CGGCGCGATGGCCGGCTACCTGTTCCTGTGGTCGATCTATTGGGCCTACAAGCTCTTGCGCGGCCGTGAAGGTATGGGCT
ACGGCGACTTCAAGTTGATGGCGGCGCTCGGCGCGTGGTTCGGCTGGCAGGCGCTGCCGCTGCTGGTGCTGCTGTCGTCG
GTCGTGGGGCTGGTGTTTGGGCTCGTGCGCATTGCGCGCGGCGCGAAGAGCGAATCGCCGTTCTCGTTCGGGCCGTTCAT
TGCCGGGGCCGGCGTGATCGCACTGCTGGCCGGCCCGCAATTGCTGGTGATGGCGGGCCTCGGTCCGCTGCTAGCGCCAT
AA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (24-129)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.982	92.491	0.509
pilD	Vibrio campbellii strain DS40M4	50.903	94.539	0.481
pilD	Neisseria gonorrhoeae MS11	48.881	91.468	0.447
pilD	Acinetobacter nosocomialis M2	48.855	89.42	0.437
pilD	Acinetobacter baumannii D1279779	48.855	89.42	0.437