Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N4T19_RS18200 Genome accession   NZ_CP104377
Coordinates   3967312..3967905 (+) Length   197 a.a.
NCBI ID   WP_021027012.1    Uniprot ID   -
Organism   Comamonas sp. PR12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3962312..3972905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T19_RS18190 (N4T19_18190) uvrA 3962466..3965612 (-) 3147 WP_260718702.1 excinuclease ABC subunit UvrA -
  N4T19_RS18195 (N4T19_18195) - 3965928..3967121 (+) 1194 WP_260720316.1 MFS transporter -
  N4T19_RS18200 (N4T19_18200) ssb 3967312..3967905 (+) 594 WP_021027012.1 single-stranded DNA-binding protein Machinery gene
  N4T19_RS18205 (N4T19_18205) - 3968263..3968589 (+) 327 WP_021027013.1 multiprotein-bridging factor 1 family protein -
  N4T19_RS18210 (N4T19_18210) - 3968604..3969911 (+) 1308 WP_260718703.1 type II toxin-antitoxin system HipA family toxin -
  N4T19_RS18215 (N4T19_18215) - 3970242..3970712 (-) 471 WP_260718704.1 YkgB family protein -
  N4T19_RS18220 (N4T19_18220) - 3970752..3971312 (-) 561 WP_260718705.1 TetR/AcrR family transcriptional regulator -
  N4T19_RS18225 (N4T19_18225) - 3971642..3972406 (+) 765 WP_260718706.1 transporter substrate-binding domain-containing protein -
  N4T19_RS18230 (N4T19_18230) - 3972403..3972882 (+) 480 WP_260718707.1 YbaK/prolyl-tRNA synthetase associated domain-containing protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 20791.87 Da        Isoelectric Point: 5.9505

>NTDB_id=729230 N4T19_RS18200 WP_021027012.1 3967312..3967905(+) (ssb) [Comamonas sp. PR12]
MASVNKVIIVGNLGRDPEIRTFPSGDQVANVTIATTDRWRDKNSGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQATGQERYATEIRADSMQMLGSRQGQGGGGGQGGGDDYGYGDSGYGDQGGGGGGAPAGNYQRRAPAPAMAP
AAAPRQAPPPRPAPAPMPAPAPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=729230 N4T19_RS18200 WP_021027012.1 3967312..3967905(+) (ssb) [Comamonas sp. PR12]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAACCTCGGCCGCGACCCTGAAATCCGCACCTTCCCCTCAGGCGACCA
GGTGGCCAACGTCACTATCGCCACCACGGACCGCTGGCGCGACAAGAACAGCGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTCGTGTTCAATGGCCGCTTGGCTGAAATCGTCGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCACCGGCCAGGAGCGCTATGCGACGGAAATCCGCGCTGACTCGATGCA
GATGCTGGGCAGCCGCCAAGGCCAGGGCGGCGGTGGCGGTCAGGGCGGTGGCGATGACTACGGCTATGGCGACAGCGGCT
ACGGTGACCAGGGCGGTGGCGGCGGCGGTGCACCCGCTGGCAACTACCAGCGCCGGGCCCCCGCACCGGCGATGGCTCCA
GCCGCCGCACCCCGCCAGGCACCGCCTCCCCGTCCAGCACCGGCACCCATGCCTGCGCCAGCCCCACGCGCTGCGTCTGG
CTTTGACGATATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.739

100

0.523
  ssb Vibrio cholerae strain A1552

49.268

100

0.513
  ssb Neisseria gonorrhoeae MS11

44.898

99.492

0.447
  ssb Neisseria meningitidis MC58

43.284

100

0.442