Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   N4T40_RS04705 Genome accession   NZ_CP104335
Coordinates   890316..891134 (-) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii strain 2021CK-01408     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 885316..896134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T40_RS04690 (N4T40_04690) pilE 885533..885958 (-) 426 WP_000788343.1 type IV pilin protein Machinery gene
  N4T40_RS04695 (N4T40_04695) pilY2 885955..886437 (-) 483 WP_001046422.1 type IV pilin protein Machinery gene
  N4T40_RS04700 (N4T40_04700) pilY1 886450..890304 (-) 3855 WP_000768952.1 PilC/PilY family type IV pilus protein Machinery gene
  N4T40_RS04705 (N4T40_04705) pilX 890316..891134 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  N4T40_RS04710 (N4T40_04710) pilW 891131..892132 (-) 1002 WP_000079202.1 PilW family protein Machinery gene
  N4T40_RS04715 (N4T40_04715) pilV 892133..892693 (-) 561 WP_100222559.1 type IV pilus modification protein PilV Machinery gene
  N4T40_RS04720 (N4T40_04720) fimU 892687..893160 (-) 474 WP_001214057.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  N4T40_RS04725 (N4T40_04725) ispH 893330..894280 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N4T40_RS04730 (N4T40_04730) gmk 894403..895032 (+) 630 WP_000015937.1 guanylate kinase -
  N4T40_RS04735 (N4T40_04735) rpoZ 895105..895383 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  N4T40_RS04740 (N4T40_04740) - 895422..895552 (+) 131 Protein_912 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=728719 N4T40_RS04705 WP_000149377.1 890316..891134(-) (pilX) [Acinetobacter baumannii strain 2021CK-01408]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=728719 N4T40_RS04705 WP_000149377.1 890316..891134(-) (pilX) [Acinetobacter baumannii strain 2021CK-01408]
ATGACCCATTTAAATTATAAAAATATCAAAGGTCGATCTAAGGAAACAGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATCGTTATCTCTGTAGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTTAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCGAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGTATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989