Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   N4T40_RS04695 Genome accession   NZ_CP104335
Coordinates   885955..886437 (-) Length   160 a.a.
NCBI ID   WP_001046422.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2021CK-01408     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 880955..891437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T40_RS04660 (N4T40_04660) - 881062..882096 (+) 1035 WP_001189451.1 lipase secretion chaperone -
  N4T40_RS04665 (N4T40_04665) - 882211..883152 (+) 942 WP_085943440.1 triacylglycerol lipase -
  N4T40_RS04670 (N4T40_04670) rplS 883205..883573 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  N4T40_RS04675 (N4T40_04675) trmD 883781..884521 (-) 741 WP_000464596.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  N4T40_RS04680 (N4T40_04680) rimM 884567..885115 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  N4T40_RS04685 (N4T40_04685) rpsP 885135..885386 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  N4T40_RS04690 (N4T40_04690) pilE 885533..885958 (-) 426 WP_000788343.1 type IV pilin protein Machinery gene
  N4T40_RS04695 (N4T40_04695) pilY2 885955..886437 (-) 483 WP_001046422.1 type IV pilin protein Machinery gene
  N4T40_RS04700 (N4T40_04700) pilY1 886450..890304 (-) 3855 WP_000768952.1 PilC/PilY family type IV pilus protein Machinery gene
  N4T40_RS04705 (N4T40_04705) pilX 890316..891134 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17474.77 Da        Isoelectric Point: 9.1833

>NTDB_id=728717 N4T40_RS04695 WP_001046422.1 885955..886437(-) (pilY2) [Acinetobacter baumannii strain 2021CK-01408]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAGQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETKSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=728717 N4T40_RS04695 WP_001046422.1 885955..886437(-) (pilY2) [Acinetobacter baumannii strain 2021CK-01408]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGGACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAAGAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

96.875

100

0.969
  comE Acinetobacter baylyi ADP1

40.116

100

0.431