Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   N4T40_RS04720 Genome accession   NZ_CP104335
Coordinates   892687..893160 (-) Length   157 a.a.
NCBI ID   WP_001214057.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2021CK-01408     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 887687..898160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T40_RS04705 (N4T40_04705) pilX 890316..891134 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  N4T40_RS04710 (N4T40_04710) pilW 891131..892132 (-) 1002 WP_000079202.1 PilW family protein Machinery gene
  N4T40_RS04715 (N4T40_04715) pilV 892133..892693 (-) 561 WP_100222559.1 type IV pilus modification protein PilV Machinery gene
  N4T40_RS04720 (N4T40_04720) fimU 892687..893160 (-) 474 WP_001214057.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  N4T40_RS04725 (N4T40_04725) ispH 893330..894280 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N4T40_RS04730 (N4T40_04730) gmk 894403..895032 (+) 630 WP_000015937.1 guanylate kinase -
  N4T40_RS04735 (N4T40_04735) rpoZ 895105..895383 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  N4T40_RS04740 (N4T40_04740) - 895422..895552 (+) 131 Protein_912 hypothetical protein -
  N4T40_RS04745 (N4T40_04745) - 895593..897698 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16863.51 Da        Isoelectric Point: 8.5355

>NTDB_id=728722 N4T40_RS04720 WP_001214057.1 892687..893160(-) (fimU) [Acinetobacter baumannii strain 2021CK-01408]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLEIKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=728722 N4T40_RS04720 WP_001214057.1 892687..893160(-) (fimU) [Acinetobacter baumannii strain 2021CK-01408]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAATTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994