Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   N4T40_RS04715 Genome accession   NZ_CP104335
Coordinates   892133..892693 (-) Length   186 a.a.
NCBI ID   WP_100222559.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2021CK-01408     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 887133..897693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T40_RS04705 (N4T40_04705) pilX 890316..891134 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  N4T40_RS04710 (N4T40_04710) pilW 891131..892132 (-) 1002 WP_000079202.1 PilW family protein Machinery gene
  N4T40_RS04715 (N4T40_04715) pilV 892133..892693 (-) 561 WP_100222559.1 type IV pilus modification protein PilV Machinery gene
  N4T40_RS04720 (N4T40_04720) fimU 892687..893160 (-) 474 WP_001214057.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  N4T40_RS04725 (N4T40_04725) ispH 893330..894280 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N4T40_RS04730 (N4T40_04730) gmk 894403..895032 (+) 630 WP_000015937.1 guanylate kinase -
  N4T40_RS04735 (N4T40_04735) rpoZ 895105..895383 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  N4T40_RS04740 (N4T40_04740) - 895422..895552 (+) 131 Protein_912 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20166.19 Da        Isoelectric Point: 8.2213

>NTDB_id=728721 N4T40_RS04715 WP_100222559.1 892133..892693(-) (pilV) [Acinetobacter baumannii strain 2021CK-01408]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTLASQYPTFVRS
YSNYTSDTPAPTSCFYSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNA
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=728721 N4T40_RS04715 WP_100222559.1 892133..892693(-) (pilV) [Acinetobacter baumannii strain 2021CK-01408]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCTAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTTATTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATGCT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

98.387

100

0.984
  pilV Acinetobacter baylyi ADP1

40.86

100

0.409