Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   W01_RS10940 Genome accession   NZ_AP019547
Coordinates   2404698..2405156 (+) Length   152 a.a.
NCBI ID   WP_173054623.1    Uniprot ID   A0A455XF15
Organism   Candidatus Nitrotoga sp. AM1P     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2399698..2410156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  W01_RS10930 (W01_21260) uvrA 2400421..2403249 (-) 2829 WP_173054621.1 excinuclease ABC subunit UvrA -
  W01_RS10935 (W01_21270) - 2403338..2404696 (+) 1359 WP_173055922.1 MFS transporter -
  W01_RS10940 (W01_21280) ssb 2404698..2405156 (+) 459 WP_173054623.1 single-stranded DNA-binding protein Machinery gene
  W01_RS10945 (W01_21290) - 2405588..2405998 (-) 411 WP_173054625.1 DUF3106 domain-containing protein -
  W01_RS10950 (W01_21300) - 2406007..2406351 (-) 345 WP_173054627.1 DUF3619 family protein -
  W01_RS10955 (W01_21310) - 2406348..2406956 (-) 609 WP_242006946.1 RNA polymerase sigma factor -
  W01_RS10960 (W01_21320) - 2407253..2408959 (+) 1707 WP_173054629.1 acetolactate synthase 3 catalytic subunit -
  W01_RS10965 (W01_21330) ilvN 2408959..2409450 (+) 492 WP_173054631.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16811.88 Da        Isoelectric Point: 7.0185

>NTDB_id=72853 W01_RS10940 WP_173054623.1 2404698..2405156(+) (ssb) [Candidatus Nitrotoga sp. AM1P]
MSVNKVILVGRLGKDPDTRYMPNGEAVTNATLATSENWKDKSGEKQEKTEWHNLTFYRRLAEIAGEFLKKGSMIYVEGKL
ATRKWQDKEGKDRYTTDIIVNEMQMLSSKSGSGSFDIVDKPAASSAGAPATNKQPAPVKSGGFDNFDDDIPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=72853 W01_RS10940 WP_173054623.1 2404698..2405156(+) (ssb) [Candidatus Nitrotoga sp. AM1P]
ATGTCGGTGAATAAAGTAATTTTAGTAGGACGGCTGGGCAAAGATCCGGATACGCGTTACATGCCCAATGGCGAGGCAGT
GACCAATGCCACATTGGCTACCTCAGAAAACTGGAAGGACAAAAGCGGCGAAAAACAGGAAAAAACAGAATGGCATAACC
TGACTTTCTACCGTCGCCTGGCCGAAATTGCCGGAGAATTTCTGAAGAAAGGTTCGATGATTTATGTTGAGGGCAAGCTT
GCCACGCGTAAATGGCAGGACAAGGAAGGCAAGGATCGCTATACCACCGATATCATTGTTAATGAAATGCAGATGTTATC
CAGTAAGTCTGGCAGCGGGAGTTTTGATATAGTGGATAAACCGGCTGCATCGTCAGCTGGGGCGCCTGCTACCAATAAAC
AACCGGCACCAGTCAAGAGCGGCGGTTTTGATAACTTCGATGACGACATACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A455XF15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.153

100

0.572
  ssb Vibrio cholerae strain A1552

46.893

100

0.546
  ssb Neisseria gonorrhoeae MS11

45.714

100

0.526
  ssb Neisseria meningitidis MC58

45.143

100

0.52

Multiple sequence alignment