Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N2K92_RS14955 Genome accession   NZ_CP104297
Coordinates   3135743..3136324 (-) Length   193 a.a.
NCBI ID   WP_279472392.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ZHOU     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3130743..3141324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2K92_RS14930 (N2K92_14945) - 3130762..3132261 (+) 1500 WP_001257162.1 PLP-dependent aminotransferase family protein -
  N2K92_RS14935 (N2K92_14950) - 3132322..3133764 (-) 1443 WP_071210479.1 amino acid permease -
  N2K92_RS14940 (N2K92_14955) - 3134070..3134618 (-) 549 WP_000081859.1 XRE family transcriptional regulator -
  N2K92_RS14945 (N2K92_14960) - 3134687..3135382 (+) 696 WP_049581108.1 AzlC family ABC transporter permease -
  N2K92_RS14950 (N2K92_14965) - 3135379..3135702 (+) 324 WP_000082712.1 AzlD domain-containing protein -
  N2K92_RS14955 (N2K92_14970) ssb 3135743..3136324 (-) 582 WP_279472392.1 single-stranded DNA-binding protein Machinery gene
  N2K92_RS14960 (N2K92_14975) - 3136376..3137740 (-) 1365 WP_000980460.1 MFS transporter -
  N2K92_RS14965 (N2K92_14980) - 3137887..3138969 (-) 1083 WP_000680211.1 DUF475 domain-containing protein -
  N2K92_RS14970 (N2K92_14985) tenA 3139232..3139906 (+) 675 WP_000899418.1 thiaminase II -
  N2K92_RS14975 (N2K92_14990) - 3139956..3140297 (-) 342 WP_000263326.1 GlpM family protein -
  N2K92_RS14980 (N2K92_14995) - 3140350..3140703 (-) 354 WP_002053763.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21004.88 Da        Isoelectric Point: 6.4822

>NTDB_id=728439 N2K92_RS14955 WP_279472392.1 3135743..3136324(-) (ssb) [Acinetobacter baumannii strain ZHOU]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWIDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGAQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=728439 N2K92_RS14955 WP_279472392.1 3135743..3136324(-) (ssb) [Acinetobacter baumannii strain ZHOU]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGATAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACAATGGTGGTTATGGTGCCCAAGGTGGTTTC
GGTAATGGTGGCAATAGCCCGCAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

39.086

100

0.399
  ssb Neisseria gonorrhoeae MS11

39.086

100

0.399