Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | N4Q44_RS15450 | Genome accession | NZ_CP104295 |
| Coordinates | 3276543..3276896 (-) | Length | 117 a.a. |
| NCBI ID | WP_071211529.1 | Uniprot ID | A0A1S2G1T5 |
| Organism | Acinetobacter baumannii strain DETAB-C9 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3270872..3313302 | 3276543..3276896 | within | 0 |
Gene organization within MGE regions
Location: 3270872..3313302
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4Q44_RS15420 (N4Q44_15430) | - | 3270872..3271819 (+) | 948 | WP_045544537.1 | LysR substrate-binding domain-containing protein | - |
| N4Q44_RS15425 (N4Q44_15435) | - | 3271923..3273098 (-) | 1176 | WP_017816492.1 | zinc-binding dehydrogenase | - |
| N4Q44_RS15430 (N4Q44_15440) | add | 3273500..3274495 (+) | 996 | WP_029423914.1 | adenosine deaminase | - |
| N4Q44_RS15440 (N4Q44_15450) | - | 3275070..3276230 (-) | 1161 | WP_001272508.1 | tyrosine-type recombinase/integrase | - |
| N4Q44_RS15445 (N4Q44_15455) | - | 3276319..3276522 (-) | 204 | WP_071211528.1 | hypothetical protein | - |
| N4Q44_RS15450 (N4Q44_15460) | ssb | 3276543..3276896 (-) | 354 | WP_071211529.1 | single-stranded DNA-binding protein | Machinery gene |
| N4Q44_RS15455 (N4Q44_15465) | - | 3276884..3277201 (-) | 318 | WP_000049659.1 | hypothetical protein | - |
| N4Q44_RS15460 (N4Q44_15470) | - | 3277204..3277722 (-) | 519 | WP_071211530.1 | hypothetical protein | - |
| N4Q44_RS15465 (N4Q44_15475) | - | 3277790..3278386 (-) | 597 | WP_000274818.1 | hypothetical protein | - |
| N4Q44_RS15470 (N4Q44_15480) | - | 3278411..3281128 (-) | 2718 | WP_071211531.1 | toprim domain-containing protein | - |
| N4Q44_RS15475 (N4Q44_15485) | - | 3281143..3281325 (-) | 183 | WP_001133583.1 | hypothetical protein | - |
| N4Q44_RS15480 (N4Q44_15490) | - | 3281328..3281561 (-) | 234 | WP_000023425.1 | hypothetical protein | - |
| N4Q44_RS15485 (N4Q44_15495) | - | 3281558..3281761 (-) | 204 | WP_071211532.1 | hypothetical protein | - |
| N4Q44_RS15490 (N4Q44_15500) | - | 3281844..3282188 (+) | 345 | WP_071211533.1 | hypothetical protein | - |
| N4Q44_RS15495 (N4Q44_15505) | - | 3282230..3282790 (-) | 561 | WP_071211547.1 | hypothetical protein | - |
| N4Q44_RS15500 (N4Q44_15510) | - | 3282801..3282971 (-) | 171 | WP_171259127.1 | hypothetical protein | - |
| N4Q44_RS15505 (N4Q44_15515) | - | 3283327..3284472 (+) | 1146 | WP_071211534.1 | hypothetical protein | - |
| N4Q44_RS15510 (N4Q44_15520) | - | 3284529..3285062 (+) | 534 | WP_071211535.1 | PAAR domain-containing protein | - |
| N4Q44_RS15515 (N4Q44_15525) | - | 3285068..3285679 (+) | 612 | WP_031966861.1 | hypothetical protein | - |
| N4Q44_RS15520 (N4Q44_15530) | - | 3285681..3286151 (+) | 471 | WP_071211536.1 | hypothetical protein | - |
| N4Q44_RS15525 (N4Q44_15535) | - | 3286263..3286550 (-) | 288 | WP_001214242.1 | ogr/Delta-like zinc finger family protein | - |
| N4Q44_RS15535 (N4Q44_15545) | - | 3286829..3287620 (+) | 792 | WP_071211537.1 | DNA adenine methylase | - |
| N4Q44_RS15540 (N4Q44_15550) | - | 3287617..3288837 (-) | 1221 | WP_071211538.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| N4Q44_RS15545 (N4Q44_15555) | - | 3288840..3289259 (-) | 420 | WP_000979932.1 | phage tail protein | - |
| N4Q44_RS15550 (N4Q44_15560) | - | 3289276..3293196 (-) | 3921 | WP_071211539.1 | phage tail protein | - |
| N4Q44_RS15555 (N4Q44_15565) | - | 3293193..3293264 (-) | 72 | WP_249308986.1 | GpE family phage tail protein | - |
| N4Q44_RS15560 (N4Q44_15570) | - | 3293324..3293689 (-) | 366 | WP_062936698.1 | phage tail assembly protein | - |
| N4Q44_RS15565 (N4Q44_15575) | - | 3293755..3294270 (-) | 516 | WP_001207577.1 | phage major tail tube protein | - |
| N4Q44_RS15570 (N4Q44_15580) | - | 3294286..3295455 (-) | 1170 | WP_000785699.1 | phage tail sheath protein | - |
| N4Q44_RS15575 (N4Q44_15585) | - | 3295565..3296059 (-) | 495 | WP_062936696.1 | hypothetical protein | - |
| N4Q44_RS15580 (N4Q44_15590) | - | 3296059..3300645 (-) | 4587 | WP_071211540.1 | phage tail protein | - |
| N4Q44_RS15585 (N4Q44_15595) | - | 3300646..3301182 (-) | 537 | WP_071211541.1 | phage tail protein I | - |
| N4Q44_RS15590 (N4Q44_15600) | - | 3301182..3302099 (-) | 918 | WP_000117640.1 | baseplate J/gp47 family protein | - |
| N4Q44_RS15595 (N4Q44_15605) | - | 3302096..3302446 (-) | 351 | WP_000062375.1 | GPW/gp25 family protein | - |
| N4Q44_RS15600 (N4Q44_15610) | - | 3302443..3303033 (-) | 591 | WP_001026776.1 | phage baseplate assembly protein V | - |
| N4Q44_RS15605 (N4Q44_15615) | - | 3303421..3303882 (-) | 462 | WP_000774613.1 | phage virion morphogenesis protein | - |
| N4Q44_RS15610 (N4Q44_15620) | - | 3303885..3304415 (-) | 531 | WP_000735813.1 | phage tail protein | - |
| N4Q44_RS15615 (N4Q44_15625) | - | 3304412..3305242 (-) | 831 | WP_000600985.1 | N-acetylmuramidase family protein | - |
| N4Q44_RS15620 (N4Q44_15630) | - | 3305239..3305496 (-) | 258 | WP_000604752.1 | phage holin family protein | - |
| N4Q44_RS15625 (N4Q44_15635) | - | 3305493..3305852 (-) | 360 | WP_001114932.1 | putative holin | - |
| N4Q44_RS15630 (N4Q44_15640) | - | 3305855..3306064 (-) | 210 | WP_001099130.1 | tail protein X | - |
| N4Q44_RS15635 (N4Q44_15645) | - | 3306061..3306510 (-) | 450 | WP_000011350.1 | head completion/stabilization protein | - |
| N4Q44_RS15640 (N4Q44_15650) | gpM | 3306617..3307363 (-) | 747 | WP_062936694.1 | phage terminase small subunit | - |
| N4Q44_RS15645 (N4Q44_15655) | - | 3307369..3308379 (-) | 1011 | WP_001247975.1 | phage major capsid protein, P2 family | - |
| N4Q44_RS15650 (N4Q44_15660) | - | 3308416..3309276 (-) | 861 | WP_071211542.1 | GPO family capsid scaffolding protein | - |
| N4Q44_RS15655 (N4Q44_15665) | - | 3309454..3311232 (+) | 1779 | WP_071211543.1 | terminase family protein | - |
| N4Q44_RS15660 (N4Q44_15670) | - | 3311229..3312278 (+) | 1050 | WP_062936692.1 | phage portal protein | - |
| N4Q44_RS15665 (N4Q44_15675) | - | 3312620..3312799 (+) | 180 | WP_000009390.1 | type II toxin-antitoxin system HicA family toxin | - |
| N4Q44_RS15670 (N4Q44_15680) | - | 3312889..3313302 (+) | 414 | WP_000878688.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 117 a.a. Molecular weight: 13331.01 Da Isoelectric Point: 10.1439
>NTDB_id=728390 N4Q44_RS15450 WP_071211529.1 3276543..3276896(-) (ssb) [Acinetobacter baumannii strain DETAB-C9]
MRGVNKVILVGSLGADPITRQFPNGSSVTNFSIATSEKWQDKRTGDWIENTEWHRIVANNKLGEIAQKFLKKGSKVFIEG
SLRTRQWTDQNQNQFTVTEVRADHLQMLDSLPQANPY
MRGVNKVILVGSLGADPITRQFPNGSSVTNFSIATSEKWQDKRTGDWIENTEWHRIVANNKLGEIAQKFLKKGSKVFIEG
SLRTRQWTDQNQNQFTVTEVRADHLQMLDSLPQANPY
Nucleotide
Download Length: 354 bp
>NTDB_id=728390 N4Q44_RS15450 WP_071211529.1 3276543..3276896(-) (ssb) [Acinetobacter baumannii strain DETAB-C9]
ATGCGTGGTGTAAATAAAGTCATTCTTGTAGGGAGTCTCGGAGCTGATCCTATTACAAGACAATTTCCGAATGGTTCTTC
AGTAACAAACTTTTCTATAGCTACTTCAGAAAAGTGGCAGGACAAACGTACTGGTGATTGGATAGAGAATACTGAGTGGC
ATCGAATTGTGGCTAACAACAAATTAGGAGAAATTGCTCAAAAATTTCTAAAAAAAGGTTCAAAAGTTTTCATCGAAGGC
TCTTTGCGTACACGTCAGTGGACTGATCAAAATCAAAATCAATTCACTGTGACAGAAGTAAGGGCAGATCACTTACAAAT
GCTGGATAGTCTTCCACAAGCAAACCCTTATTGA
ATGCGTGGTGTAAATAAAGTCATTCTTGTAGGGAGTCTCGGAGCTGATCCTATTACAAGACAATTTCCGAATGGTTCTTC
AGTAACAAACTTTTCTATAGCTACTTCAGAAAAGTGGCAGGACAAACGTACTGGTGATTGGATAGAGAATACTGAGTGGC
ATCGAATTGTGGCTAACAACAAATTAGGAGAAATTGCTCAAAAATTTCTAAAAAAAGGTTCAAAAGTTTTCATCGAAGGC
TCTTTGCGTACACGTCAGTGGACTGATCAAAATCAAAATCAATTCACTGTGACAGAAGTAAGGGCAGATCACTTACAAAT
GCTGGATAGTCTTCCACAAGCAAACCCTTATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
56.364 |
94.017 |
0.53 |
| ssb | Vibrio cholerae strain A1552 |
55.556 |
84.615 |
0.47 |
| ssb | Neisseria meningitidis MC58 |
46.667 |
89.744 |
0.419 |
| ssb | Neisseria gonorrhoeae MS11 |
46.667 |
89.744 |
0.419 |