Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N4Q44_RS00970 Genome accession   NZ_CP104295
Coordinates   218411..218992 (+) Length   193 a.a.
NCBI ID   WP_032025015.1    Uniprot ID   A0A0J8T650
Organism   Acinetobacter baumannii strain DETAB-C9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 213411..223992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q44_RS00945 (N4Q44_00945) - 214032..214385 (+) 354 WP_002053763.1 DUF1304 domain-containing protein -
  N4Q44_RS00950 (N4Q44_00950) - 214438..214779 (+) 342 WP_000263326.1 GlpM family protein -
  N4Q44_RS00955 (N4Q44_00955) tenA 214829..215503 (-) 675 WP_000899418.1 thiaminase II -
  N4Q44_RS00960 (N4Q44_00960) - 215766..216848 (+) 1083 WP_000680211.1 DUF475 domain-containing protein -
  N4Q44_RS00965 (N4Q44_00965) - 216995..218359 (+) 1365 WP_000980460.1 MFS transporter -
  N4Q44_RS00970 (N4Q44_00970) ssb 218411..218992 (+) 582 WP_032025015.1 single-stranded DNA-binding protein Machinery gene
  N4Q44_RS00975 (N4Q44_00975) - 219033..219356 (-) 324 WP_000082712.1 AzlD domain-containing protein -
  N4Q44_RS00980 (N4Q44_00980) - 219353..220048 (-) 696 WP_049581108.1 AzlC family ABC transporter permease -
  N4Q44_RS00985 (N4Q44_00985) - 220117..220665 (+) 549 WP_000081859.1 XRE family transcriptional regulator -
  N4Q44_RS00990 (N4Q44_00990) - 220971..222413 (+) 1443 WP_071211525.1 amino acid permease -
  N4Q44_RS00995 (N4Q44_00995) - 222474..223973 (-) 1500 WP_001257162.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20992.83 Da        Isoelectric Point: 6.4822

>NTDB_id=728361 N4Q44_RS00970 WP_032025015.1 218411..218992(+) (ssb) [Acinetobacter baumannii strain DETAB-C9]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGAQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=728361 N4Q44_RS00970 WP_032025015.1 218411..218992(+) (ssb) [Acinetobacter baumannii strain DETAB-C9]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACAATGGTGGTTATGGTGCCCAAGGTGGTTTC
GGTAATGGTGGCAATAGCCCGCAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8T650

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

39.086

100

0.399
  ssb Neisseria gonorrhoeae MS11

39.086

100

0.399