Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GDK20_RS10840 Genome accession   NZ_AP019545
Coordinates   2140462..2140932 (-) Length   156 a.a.
NCBI ID   WP_000934759.1    Uniprot ID   A0A2I7Y8V1
Organism   Staphylococcus aureus strain KG-22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2135462..2145932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDK20_RS10775 (SAKG22_19740) - 2135947..2136363 (-) 417 WP_000590122.1 hypothetical protein -
  GDK20_RS10780 (SAKG22_19750) - 2136391..2136591 (-) 201 WP_001557462.1 DUF1514 family protein -
  GDK20_RS10785 (SAKG22_19760) - 2136591..2136740 (-) 150 WP_000595265.1 transcriptional activator RinB -
  GDK20_RS10790 (SAKG22_19770) - 2136737..2136943 (-) 207 WP_152064756.1 DUF1381 domain-containing protein -
  GDK20_RS10795 (SAKG22_19780) - 2136940..2137185 (-) 246 WP_001282077.1 hypothetical protein -
  GDK20_RS10800 (SAKG22_19790) - 2137222..2137758 (-) 537 WP_000185693.1 dUTPase -
  GDK20_RS10805 (SAKG22_19800) - 2137755..2138000 (-) 246 WP_001065108.1 DUF1024 family protein -
  GDK20_RS10810 (SAKG22_19810) - 2138015..2138263 (-) 249 WP_000178987.1 SAV1978 family virulence-associated passenger protein -
  GDK20_RS10815 (SAKG22_19820) - 2138260..2138517 (-) 258 WP_000111491.1 DUF3310 domain-containing protein -
  GDK20_RS10820 (SAKG22_19830) - 2138517..2138888 (-) 372 WP_000101279.1 SA1788 family PVL leukocidin-associated protein -
  GDK20_RS10825 (SAKG22_19840) - 2138901..2139305 (-) 405 WP_000401969.1 RusA family crossover junction endodeoxyribonuclease -
  GDK20_RS10830 (SAKG22_19850) - 2139314..2139532 (-) 219 WP_000338528.1 hypothetical protein -
  GDK20_RS10835 (SAKG22_19860) - 2139539..2140432 (-) 894 WP_000148333.1 DnaD domain-containing protein -
  GDK20_RS10840 (SAKG22_19870) ssbA 2140462..2140932 (-) 471 WP_000934759.1 single-stranded DNA-binding protein Machinery gene
  GDK20_RS10845 (SAKG22_19880) - 2140933..2141550 (-) 618 WP_064135358.1 MBL fold metallo-hydrolase -
  GDK20_RS10850 (SAKG22_19890) - 2141631..2142551 (-) 921 WP_000180600.1 recombinase RecT -
  GDK20_RS10855 (SAKG22_19900) - 2142553..2144496 (-) 1944 WP_000700554.1 AAA family ATPase -
  GDK20_RS10860 (SAKG22_19910) - 2144505..2144768 (-) 264 WP_001205732.1 hypothetical protein -
  GDK20_RS10865 (SAKG22_19920) - 2144777..2145037 (-) 261 WP_000291510.1 DUF1108 family protein -
  GDK20_RS10870 (SAKG22_19930) - 2145042..2145344 (-) 303 WP_000165371.1 DUF2482 family protein -
  GDK20_RS10875 (SAKG22_19940) - 2145439..2145600 (-) 162 WP_000048129.1 DUF1270 family protein -
  GDK20_RS10880 (SAKG22_19950) - 2145597..2145920 (-) 324 WP_001120201.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17641.52 Da        Isoelectric Point: 5.2672

>NTDB_id=72831 GDK20_RS10840 WP_000934759.1 2140462..2140932(-) (ssbA) [Staphylococcus aureus strain KG-22]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=72831 GDK20_RS10840 WP_000934759.1 2140462..2140932(-) (ssbA) [Staphylococcus aureus strain KG-22]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365

Multiple sequence alignment