Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N2K12_RS18370 Genome accession   NZ_CP104279
Coordinates   3872761..3873327 (-) Length   188 a.a.
NCBI ID   WP_042415868.1    Uniprot ID   A0AA42W1W0
Organism   Comamonas aquatica strain SCLZS63     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3867761..3878327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2K12_RS18345 hprK 3868106..3869071 (+) 966 WP_042415854.1 HPr(Ser) kinase/phosphatase -
  N2K12_RS18350 fur 3869138..3869566 (-) 429 WP_042415857.1 ferric iron uptake transcriptional regulator -
  N2K12_RS18355 - 3869714..3870259 (+) 546 WP_042415860.1 outer membrane protein assembly factor BamE -
  N2K12_RS18360 dapB 3870358..3871185 (+) 828 WP_260674418.1 4-hydroxy-tetrahydrodipicolinate reductase -
  N2K12_RS18365 - 3871235..3872515 (-) 1281 WP_260674419.1 diguanylate cyclase -
  N2K12_RS18370 ssb 3872761..3873327 (-) 567 WP_042415868.1 single-stranded DNA-binding protein Machinery gene
  N2K12_RS18375 - 3873600..3874781 (-) 1182 WP_260675648.1 MFS transporter -
  N2K12_RS18380 uvrA 3874981..3878019 (+) 3039 WP_260674420.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20454.61 Da        Isoelectric Point: 5.9554

>NTDB_id=728218 N2K12_RS18370 WP_042415868.1 3872761..3873327(-) (ssb) [Comamonas aquatica strain SCLZS63]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKESTEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQATGQERYATEIRADSMQMLGSRQGMGGGNQNQGYGDDAGYGDNGGYEAQAPRRAPAPAPRQAAPQQRMAP
PAAAPAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=728218 N2K12_RS18370 WP_042415868.1 3872761..3873327(-) (ssb) [Comamonas aquatica strain SCLZS63]
ATGGCATCCGTCAACAAGGTCATCATCGTCGGCAACTTGGGGCGCGACCCCGAAATGCGCACTTTCCCCAGCGGGGACCA
GGTCGCCAACGTCACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAATCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGCCTGGCCGAAATCGTCGGCCAGTACCTGCGCAAGGGCTCGCAGGTCTATGTGGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGGCCACCGGCCAGGAGCGCTACGCCACCGAAATCCGTGCCGACAGCATGCA
GATGCTGGGCAGCCGCCAGGGCATGGGCGGTGGCAACCAGAACCAGGGCTATGGCGATGACGCCGGCTATGGCGACAACG
GTGGCTATGAGGCCCAAGCCCCACGCCGCGCGCCAGCGCCCGCACCGCGCCAAGCCGCACCCCAGCAGCGCATGGCACCG
CCCGCGGCGGCTCCCGCGCCCATGGCCCCACCGCCCCAGCGCGCGGCTTCCGGCTTTGACGACATGGACGACGACATTCC
GTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.03

100

0.559
  ssb Vibrio cholerae strain A1552

52.062

100

0.537
  ssb Neisseria gonorrhoeae MS11

43.915

100

0.441
  ssb Neisseria meningitidis MC58

43.386

100

0.436