Detailed information NTG0728204

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: N2K12_RS02800
• Genome accession: NZ_CP104279
• Coordinates: 597410..598279 (-)
• Length: 289 a.a.
• NCBI ID: WP_260674810.1
• Uniprot ID: -
• Organism: Comamonas aquatica strain SCLZS63
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 592410..603279

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N2K12_RS02770	argJ	592698..593927 (+)	1230	WP_260674808.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
N2K12_RS02775	-	594194..595126 (+)	933	WP_043379904.1	ATP-binding protein	-
N2K12_RS02780	-	595148..595609 (+)	462	WP_260674809.1	NUDIX domain-containing protein	-
N2K12_RS02785	-	595713..595922 (-)	210	WP_045267488.1	DNA gyrase inhibitor YacG	-
N2K12_RS02790	zapD	595949..596704 (-)	756	WP_042419933.1	cell division protein ZapD	-
N2K12_RS02795	coaE	596799..597407 (-)	609	WP_154163335.1	dephospho-CoA kinase	-
N2K12_RS02800	pilD	597410..598279 (-)	870	WP_260674810.1	A24 family peptidase	Machinery gene
N2K12_RS02805	pilC	598279..599502 (-)	1224	WP_045267485.1	type II secretion system F family protein	Machinery gene
N2K12_RS02810	pilB	599554..601299 (-)	1746	WP_210930174.1	type IV-A pilus assembly ATPase PilB	Machinery gene
N2K12_RS02815	-	601458..602387 (-)	930	WP_210931650.1	polyprenyl synthetase family protein	-
N2K12_RS02820	rplU	602598..602909 (+)	312	WP_042417032.1	50S ribosomal protein L21	-
N2K12_RS02825	rpmA	602928..603188 (+)	261	WP_042416998.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31446.01 Da
• Isoelectric Point: 7.9146

>NTDB_id=728204 N2K12_RS02800 WP_260674810.1 597410..598279(-) (pilD) [Comamonas aquatica strain SCLZS63]
MDFSVWSSAALAALLGLLIGSFLNVVIHRLPRMMEQQWDAECAQHRAAQAGQTYTPTPPALTLSKPRSRCPHCAHPIGWL
ENIPVLSWLYLRGQCAHCHAPIGIRYPLVEVATAGLFAWCITRWGFTPTGWAWCGFSATLLALALIDWDTTYLPDDLTLP
LLWAGLLVTALGWTSVALGDAVWGAAIGYLSLWSIYWVFKLITGKEGMGYGDFKLFAALGAWFGWQALVSMILMASVIGA
VIGIALKLRSSLREGGYIPFGPFLAGAGFTAMFFGPDRLLRAVLTALGL

Nucleotide

• Length: 870 bp

>NTDB_id=728204 N2K12_RS02800 WP_260674810.1 597410..598279(-) (pilD) [Comamonas aquatica strain SCLZS63]
ATGGACTTTTCTGTATGGAGCAGTGCCGCGCTGGCGGCATTGCTGGGGCTGCTGATCGGCAGCTTCTTGAACGTGGTGAT
CCATCGCCTGCCTCGCATGATGGAGCAGCAATGGGATGCCGAATGCGCACAGCACCGGGCAGCACAGGCAGGTCAAACCT
ACACGCCCACTCCGCCCGCACTGACACTGTCCAAGCCCCGCTCGCGCTGCCCCCACTGCGCCCACCCCATAGGCTGGCTG
GAGAACATCCCGGTGCTCAGCTGGCTGTACCTGCGCGGCCAATGCGCACACTGCCACGCTCCGATCGGCATCCGCTACCC
CCTGGTGGAAGTCGCGACGGCCGGGCTGTTCGCCTGGTGCATCACCCGCTGGGGATTCACCCCGACAGGCTGGGCCTGGT
GCGGCTTCAGCGCCACCTTACTGGCACTGGCGCTGATCGACTGGGACACCACCTACCTGCCCGATGACCTGACCCTGCCG
CTGCTGTGGGCCGGCCTGCTGGTCACTGCCCTGGGTTGGACCTCGGTGGCCCTGGGCGACGCCGTCTGGGGCGCCGCCAT
CGGCTACCTGTCGCTGTGGTCCATTTACTGGGTTTTCAAACTGATCACCGGCAAGGAAGGCATGGGCTACGGTGACTTCA
AGCTGTTCGCCGCCCTGGGCGCCTGGTTCGGCTGGCAAGCCCTGGTGTCCATGATCTTGATGGCGTCGGTGATCGGCGCC
GTCATCGGCATCGCCCTGAAGCTGCGCAGCAGCCTGCGCGAGGGGGGCTACATCCCGTTTGGCCCCTTTCTGGCGGGCGC
GGGCTTTACCGCGATGTTCTTCGGCCCGGACCGCCTGCTGCGCGCCGTGCTGACGGCGTTGGGCCTGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.763	96.54	0.519
pilD	Vibrio campbellii strain DS40M4	49.097	95.848	0.471
pilD	Neisseria gonorrhoeae MS11	45.675	100	0.457
pilD	Acinetobacter nosocomialis M2	46.975	97.232	0.457
pilD	Acinetobacter baumannii D1279779	46.619	97.232	0.453