Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N2O69_RS22365 Genome accession   NZ_CP104274
Coordinates   4553006..4553542 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain Ec15103     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4548006..4558542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2O69_RS22345 soxR 4549735..4550199 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  N2O69_RS22350 soxS 4550285..4550608 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  N2O69_RS22355 pdeC 4550644..4552197 (-) 1554 WP_001540433.1 c-di-GMP phosphodiesterase PdeC -
  N2O69_RS22360 yjcB 4552626..4552907 (+) 282 WP_001296643.1 YjcB family protein -
  N2O69_RS22365 ssb 4553006..4553542 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  N2O69_RS22370 uvrA 4553797..4556619 (+) 2823 WP_001774120.1 excinuclease ABC subunit UvrA -
  N2O69_RS22375 yjbR 4556828..4557184 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  N2O69_RS22380 yjbQ 4557188..4557604 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  N2O69_RS22385 aphA 4557715..4558428 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=728190 N2O69_RS22365 WP_000168305.1 4553006..4553542(-) (ssb) [Escherichia coli strain Ec15103]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=728190 N2O69_RS22365 WP_000168305.1 4553006..4553542(-) (ssb) [Escherichia coli strain Ec15103]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489