Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N0A20_RS17270 Genome accession   NZ_CP104207
Coordinates   3266375..3266914 (+) Length   179 a.a.
NCBI ID   WP_260581574.1    Uniprot ID   -
Organism   Sphingopyxis sp. PET50     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3261375..3271914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0A20_RS17245 - 3261456..3262343 (+) 888 WP_260581569.1 DMT family transporter -
  N0A20_RS17250 - 3262358..3263026 (+) 669 WP_260581570.1 COQ9 family protein -
  N0A20_RS20830 rhuM 3263396..3263746 (+) 351 Protein_3466 RhuM family protein -
  N0A20_RS20835 rhuM 3263802..3264140 (+) 339 WP_409574802.1 RhuM family protein -
  N0A20_RS17260 - 3264206..3264484 (+) 279 WP_260581572.1 ferrous iron transport protein A -
  N0A20_RS17265 - 3264481..3266346 (+) 1866 WP_260581573.1 ferrous iron transporter B -
  N0A20_RS17270 ssb 3266375..3266914 (+) 540 WP_260581574.1 single-stranded DNA-binding protein Machinery gene
  N0A20_RS17275 - 3267045..3267527 (+) 483 WP_260581575.1 MmcB family DNA repair protein -
  N0A20_RS17280 - 3267524..3267874 (-) 351 WP_260581576.1 hypothetical protein -
  N0A20_RS17285 - 3267871..3268485 (-) 615 WP_260581577.1 riboflavin synthase -
  N0A20_RS17290 ribD 3268491..3269440 (-) 950 Protein_3474 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  N0A20_RS17295 - 3269474..3269968 (-) 495 WP_260581578.1 hypothetical protein -
  N0A20_RS17300 - 3270224..3270673 (-) 450 WP_260581579.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18310.01 Da        Isoelectric Point: 5.0093

>NTDB_id=728059 N0A20_RS17270 WP_260581574.1 3266375..3266914(+) (ssb) [Sphingopyxis sp. PET50]
MAGSVNKVILIGNLGADPEIKSFQNGGKIANIRIATSENWKDRMTGERKERTEWHNVVINGEGLVGVVERYLKKGSKVYI
EGSLRTRKWQDRDGNDRYTTEVVIAGLGGNLTMLDGAPGGGGGSRGGGGGDWDNGGGSGGGWNQGGGSPGGGSGGGFGGG
TGGGGRPPFDDDLDDDVPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=728059 N0A20_RS17270 WP_260581574.1 3266375..3266914(+) (ssb) [Sphingopyxis sp. PET50]
ATGGCTGGCAGCGTCAACAAGGTAATTCTCATCGGCAATCTGGGCGCGGACCCGGAGATCAAGTCGTTCCAGAACGGCGG
CAAGATCGCCAATATCCGCATCGCGACCTCCGAGAACTGGAAGGACCGCATGACCGGCGAGCGTAAGGAGCGCACCGAAT
GGCATAATGTCGTGATCAACGGCGAAGGGCTGGTCGGCGTGGTCGAGCGTTATCTGAAAAAGGGATCGAAGGTTTATATC
GAAGGCTCGCTGCGCACCCGCAAGTGGCAGGACCGCGACGGCAACGACCGCTACACGACCGAGGTGGTGATCGCGGGGCT
CGGCGGCAACCTCACCATGCTCGACGGCGCGCCCGGCGGCGGCGGCGGATCGCGCGGCGGCGGCGGCGGCGACTGGGACA
ATGGCGGCGGCAGCGGCGGCGGCTGGAACCAGGGCGGCGGTTCGCCGGGCGGCGGCTCGGGTGGCGGCTTTGGCGGCGGC
ACGGGCGGCGGCGGACGCCCGCCGTTCGACGACGATCTCGACGACGACGTTCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.316

100

0.492
  ssb Vibrio cholerae strain A1552

47.753

99.441

0.475
  ssb Neisseria gonorrhoeae MS11

37.297

100

0.385
  ssb Neisseria meningitidis MC58

36.757

100

0.38