Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N2599_RS08725 Genome accession   NZ_CP104143
Coordinates   1720576..1721091 (-) Length   171 a.a.
NCBI ID   WP_027509487.1    Uniprot ID   A0A2N0D0G6
Organism   Rhizobium sullae strain WSM1592     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1715576..1726091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2599_RS08710 (N2599_08710) - 1717471..1718103 (+) 633 WP_027509490.1 MarC family protein -
  N2599_RS08715 (N2599_08715) - 1718246..1719061 (+) 816 WP_027509489.1 sulfurtransferase/chromate resistance protein -
  N2599_RS08720 (N2599_08720) chrA 1719063..1720478 (+) 1416 WP_027509488.1 chromate efflux transporter -
  N2599_RS08725 (N2599_08725) ssb 1720576..1721091 (-) 516 WP_027509487.1 single-stranded DNA-binding protein Machinery gene
  N2599_RS08730 (N2599_08730) uvrA 1721342..1724266 (+) 2925 WP_027509486.1 excinuclease ABC subunit UvrA -
  N2599_RS08735 (N2599_08735) - 1724269..1724715 (+) 447 WP_027509485.1 GNAT family N-acetyltransferase -
  N2599_RS08740 (N2599_08740) - 1724739..1725545 (+) 807 WP_027509484.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18435.09 Da        Isoelectric Point: 5.3175

>NTDB_id=727800 N2599_RS08725 WP_027509487.1 1720576..1721091(-) (ssb) [Rhizobium sullae strain WSM1592]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFNSTLTMLDGRGEGGASSSGGRGSSSDFGGGSNSGDDYGAPSQPSGRSSGGGGN
FSRDLDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=727800 N2599_RS08725 WP_027509487.1 1720576..1721091(-) (ssb) [Rhizobium sullae strain WSM1592]
ATGGCTGGCAGCGTGAACAAGGTAATTCTGATCGGAAACGTGGGCGCAGACCCCGAAATCCGCAGGACACAGGATGGCCG
CCCGATCGCCAATCTTCGCATCGCGACCTCCGAGACGTGGCGGGACCGCAATTCCGGCGAGCGCCGCGAAAAGACCGAAT
GGCACACCGTCGTCGTCTTCAACGAAGGTCTCTGCAAGGTTGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTACATC
GAAGGCCAGCTCCAGACCCGCAAATGGCAGGACCAGCAGGGCCAGGACCGTTACTCAACGGAAGTCGTGCTGCAGGGCTT
CAATTCGACGCTGACCATGCTCGACGGCCGCGGCGAAGGCGGCGCGAGTTCCAGCGGCGGACGCGGCAGCAGCAGCGATT
TCGGTGGCGGCAGCAATTCCGGAGACGACTACGGCGCCCCGTCGCAGCCGTCCGGCCGCAGCAGCGGTGGCGGCGGGAAT
TTCTCACGCGATCTCGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N0D0G6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.889

100

0.515
  ssb Glaesserella parasuis strain SC1401

43.939

100

0.509
  ssb Neisseria gonorrhoeae MS11

39.106

100

0.409
  ssb Neisseria meningitidis MC58

39.106

100

0.409