Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N2600_RS10375 Genome accession   NZ_CP104138
Coordinates   2048574..2049083 (+) Length   169 a.a.
NCBI ID   WP_222383952.1    Uniprot ID   -
Organism   Rhizobium sp. WSM1274     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2043574..2054083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2600_RS10360 (N2600_10360) - 2044080..2044886 (-) 807 WP_222383949.1 DUF72 domain-containing protein -
  N2600_RS10365 (N2600_10365) - 2044911..2045372 (-) 462 WP_260110827.1 GNAT family N-acetyltransferase -
  N2600_RS10370 (N2600_10370) uvrA 2045369..2048290 (-) 2922 WP_222383951.1 excinuclease ABC subunit UvrA -
  N2600_RS10375 (N2600_10375) ssb 2048574..2049083 (+) 510 WP_222383952.1 single-stranded DNA-binding protein Machinery gene
  N2600_RS10380 (N2600_10380) - 2049204..2049851 (-) 648 WP_017964283.1 MarC family protein -
  N2600_RS10385 (N2600_10385) gyrA 2050088..2052922 (+) 2835 WP_017964284.1 DNA gyrase subunit A -
  N2600_RS10390 (N2600_10390) - 2053097..2053231 (-) 135 WP_260298902.1 hypothetical protein -
  N2600_RS10395 (N2600_10395) - 2053268..2053423 (-) 156 WP_003539654.1 hypothetical protein -
  N2600_RS10400 (N2600_10400) - 2053547..2053828 (-) 282 WP_222383953.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18080.82 Da        Isoelectric Point: 5.3175

>NTDB_id=727795 N2600_RS10375 WP_222383952.1 2048574..2049083(+) (ssb) [Rhizobium sp. WSM1274]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANIRLATSETWRDRNSGERREKTEWHAIVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFGSTLTMLDGRGEGGGASGGRGSAGGGNDYGDDYGAPAPSSSPSRGGGGGGNFS
RDLDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=727795 N2600_RS10375 WP_222383952.1 2048574..2049083(+) (ssb) [Rhizobium sp. WSM1274]
ATGGCTGGTAGTGTGAATAAGGTAATTCTGATTGGAAACGTCGGCGCGGACCCGGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATATCCGTCTTGCAACCTCGGAGACCTGGCGCGACCGCAATTCCGGCGAGCGCCGCGAAAAGACCGAAT
GGCACGCGATCGTCGTCTTCAACGAAGGCCTCTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGCAGGGCCAGGACCGTTACAGCACGGAAGTGGTGCTGCAGGGTTT
CGGTTCGACGCTGACGATGCTCGACGGCCGCGGCGAAGGCGGCGGTGCGAGCGGCGGCCGTGGCAGCGCCGGTGGCGGCA
ACGATTATGGCGACGACTACGGCGCCCCGGCTCCCTCCTCATCACCCAGCCGCGGCGGTGGCGGCGGCGGCAACTTCTCG
CGGGATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.711

100

0.509
  ssb Glaesserella parasuis strain SC1401

43.455

100

0.491
  ssb Neisseria meningitidis MC58

39.011

100

0.42
  ssb Neisseria gonorrhoeae MS11

39.106

100

0.414