Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N1711_RS01725 Genome accession   NZ_CP104121
Coordinates   396216..396743 (-) Length   175 a.a.
NCBI ID   WP_036934577.1    Uniprot ID   -
Organism   Proteus vulgaris strain USDA-ARS-USMARC-49741     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 391216..401743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1711_RS01705 (N1711_01705) plsB 391576..394059 (-) 2484 WP_036934586.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  N1711_RS01710 (N1711_01710) - 394190..394561 (+) 372 WP_036934584.1 diacylglycerol kinase -
  N1711_RS01715 (N1711_01715) lexA 394689..395300 (+) 612 WP_036934582.1 transcriptional repressor LexA -
  N1711_RS01720 (N1711_01720) zur 395410..395940 (-) 531 WP_036934579.1 zinc uptake transcriptional repressor Zur -
  N1711_RS01725 (N1711_01725) ssb 396216..396743 (-) 528 WP_036934577.1 single-stranded DNA-binding protein SSB1 Machinery gene
  N1711_RS01730 (N1711_01730) uvrA 396996..399830 (+) 2835 WP_260273847.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18948.99 Da        Isoelectric Point: 4.9468

>NTDB_id=727748 N1711_RS01725 WP_036934577.1 396216..396743(-) (ssb) [Proteus vulgaris strain USDA-ARS-USMARC-49741]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGGQGGWGQPQQPQASQQFSGGAQSRPAQQPAATPA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=727748 N1711_RS01725 WP_036934577.1 396216..396743(-) (ssb) [Proteus vulgaris strain USDA-ARS-USMARC-49741]
ATGGCGAGCAGAGGCGTAAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCGGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTTGCTAACCTAACACTGGCAACATCAGAAAGCTGGCGCGATAAACAAACCGGTGAAATGAAAGAAAAAACCG
AGTGGCACCGTGTGGTAATTTTCGGAAAATTAGCGGAAATTGCAGGCGAATATCTGCGTAAAGGTTCACAAGTGTATATC
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGCGGCCAAGACAGATATAGCACTGAAGTTGTCGTTAACATCGG
CGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCACCTTCACAAGGTGGTCAAGGCGGTTGGGGTCAAC
CACAACAGCCACAAGCATCACAACAATTTAGCGGTGGCGCACAATCTCGCCCAGCACAACAACCCGCAGCAACGCCAGCG
CCAAGCAATGAACCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.432

100

0.766
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.6
  ssb Neisseria meningitidis MC58

47.753

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.486