Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P3M65_RS17105 Genome accession   NZ_CP119719
Coordinates   3503108..3503644 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain IZSBS22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3498108..3508644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3M65_RS17085 aphA 3498397..3499110 (+) 714 WP_001307512.1 acid phosphatase AphA -
  P3M65_RS17090 yjbQ 3499221..3499637 (+) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  P3M65_RS17095 yjbR 3499641..3499997 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  P3M65_RS17100 uvrA 3500032..3502854 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  P3M65_RS17105 ssb 3503108..3503644 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  P3M65_RS17110 yjcB 3503743..3504024 (-) 282 WP_001341690.1 YjcB family protein -
  P3M65_RS17115 pdeC 3504454..3506040 (+) 1587 WP_000019549.1 c-di-GMP phosphodiesterase PdeC -
  P3M65_RS17120 soxS 3506043..3506366 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  P3M65_RS17125 soxR 3506452..3506916 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=727725 P3M65_RS17105 WP_000168305.1 3503108..3503644(+) (ssb) [Escherichia coli strain IZSBS22]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=727725 P3M65_RS17105 WP_000168305.1 3503108..3503644(+) (ssb) [Escherichia coli strain IZSBS22]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489