Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   P1Y72_RS02955 Genome accession   NZ_CP119599
Coordinates   632270..633232 (-) Length   320 a.a.
NCBI ID   WP_002995771.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1133     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 627270..638232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1Y72_RS02940 (P1Y72_02940) - 628108..628815 (-) 708 WP_032465077.1 O-methyltransferase -
  P1Y72_RS02945 (P1Y72_02945) - 628881..630077 (-) 1197 WP_063631969.1 OFA family MFS transporter -
  P1Y72_RS02950 (P1Y72_02950) pepF 630452..632257 (-) 1806 WP_002995768.1 oligoendopeptidase F Regulator
  P1Y72_RS02955 (P1Y72_02955) coiA 632270..633232 (-) 963 WP_002995771.1 competence protein CoiA Machinery gene
  P1Y72_RS02960 (P1Y72_02960) - 633527..634243 (-) 717 WP_032462853.1 pseudouridine synthase -
  P1Y72_RS02965 (P1Y72_02965) nagB 634317..635066 (-) 750 WP_136093448.1 glucosamine-6-phosphate deaminase -
  P1Y72_RS02970 (P1Y72_02970) queA 635268..636296 (+) 1029 WP_023078839.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  P1Y72_RS02975 (P1Y72_02975) - 636303..637523 (+) 1221 WP_111689535.1 DUF3114 domain-containing protein -
  P1Y72_RS02980 (P1Y72_02980) - 637637..638227 (-) 591 WP_111689534.1 serine hydrolase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37748.20 Da        Isoelectric Point: 10.2013

>NTDB_id=727149 P1Y72_RS02955 WP_002995771.1 632270..633232(-) (coiA) [Streptococcus pyogenes strain 1133]
MTKILTALDGKNQLISLVTQPISTKPPFCCPACKSPVRLRQGTIRRPHFAHVQLAHCQFQAENESEEHLTLKAKLYTSLV
RTEAVCIEKYLPELQQIADLWVNDKLALEIQCSPLPVERLKKRTKAYQEKGYPVRWLLGRKLWLNTHLTALQKQFLYFSS
SLGFHLWELDAAANLLRLKYLIHEDLFGKVSYLTKTISLDHNIMEMFRLPYQQEILYSYQKKMTVNLSKRIQRALLARHP
KWLRRQEKAYLSGYNLLMLTTDAFYPQWRPVQSSSGFCQIKGNLRPYYESFKVYYKKEKDKKVQTLFSPKYYVKMDSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=727149 P1Y72_RS02955 WP_002995771.1 632270..633232(-) (coiA) [Streptococcus pyogenes strain 1133]
GTGACAAAAATATTAACCGCTTTAGATGGTAAGAATCAGCTCATTTCGCTAGTAACTCAGCCTATTTCAACGAAACCGCC
TTTTTGTTGCCCAGCTTGCAAATCTCCTGTTCGCTTGCGTCAGGGGACAATTAGACGACCTCATTTTGCCCATGTACAAC
TAGCTCATTGTCAATTCCAAGCAGAAAATGAATCTGAGGAACATTTGACGTTGAAGGCAAAACTTTACACCAGTTTAGTC
CGAACAGAAGCTGTCTGTATTGAAAAATATCTTCCTGAGCTGCAACAGATAGCAGACCTTTGGGTGAATGATAAGTTAGC
CTTAGAAATTCAGTGCAGTCCCTTGCCAGTTGAGCGTCTAAAGAAACGCACCAAAGCCTATCAAGAAAAGGGGTATCCGG
TACGATGGTTACTGGGAAGAAAATTGTGGCTTAACACTCACTTAACTGCTTTGCAAAAACAGTTTCTTTACTTTTCATCT
AGTTTGGGCTTTCATTTGTGGGAGCTGGATGCAGCTGCAAATCTGCTACGTCTCAAATATTTAATCCATGAAGACTTATT
TGGTAAGGTAAGTTACCTAACCAAAACCATTTCTTTAGACCACAATATTATGGAAATGTTTCGATTACCCTATCAGCAAG
AAATCCTTTATTCTTATCAGAAAAAAATGACTGTGAACCTATCTAAAAGAATACAAAGAGCTCTTTTAGCTAGACACCCG
AAATGGCTACGACGACAAGAAAAGGCTTACTTATCAGGCTATAATTTACTTATGTTAACAACTGATGCTTTTTATCCTCA
ATGGAGACCAGTTCAATCTTCCAGCGGTTTTTGTCAAATTAAAGGAAATCTTCGCCCTTATTATGAAAGTTTTAAAGTCT
ATTATAAAAAAGAAAAGGATAAGAAGGTGCAAACGCTTTTTTCACCAAAATATTATGTTAAAATGGATAGTAATAGAAAA
TGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

42.903

96.875

0.416
  coiA Streptococcus pneumoniae Rx1

41.613

96.875

0.403
  coiA Streptococcus pneumoniae D39

41.613

96.875

0.403
  coiA Streptococcus pneumoniae R6

41.613

96.875

0.403
  coiA Streptococcus pneumoniae TIGR4

41.613

96.875

0.403
  coiA Lactococcus lactis subsp. cremoris KW2

39.329

100

0.403