Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MRX62_RS11335 Genome accession   NZ_CP104027
Coordinates   2390878..2391372 (+) Length   164 a.a.
NCBI ID   WP_004083791.1    Uniprot ID   Q9PDI7
Organism   Xylella fastidiosa subsp. pauca strain 50088     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2385878..2396372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRX62_RS11320 (MRX62_11335) cyoB 2386217..2388214 (-) 1998 WP_060871860.1 cytochrome o ubiquinol oxidase subunit I -
  MRX62_RS11325 (MRX62_11340) cyoA 2388208..2389167 (-) 960 WP_023907802.1 ubiquinol oxidase subunit II -
  MRX62_RS11330 (MRX62_11345) - 2389631..2390629 (-) 999 WP_023907801.1 polyprenyl synthetase family protein -
  MRX62_RS11335 (MRX62_11350) ssb 2390878..2391372 (+) 495 WP_004083791.1 single-stranded DNA-binding protein Machinery gene
  MRX62_RS11340 (MRX62_11355) - 2392986..2393897 (+) 912 WP_010893900.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  MRX62_RS11345 (MRX62_11360) - 2394208..2395404 (+) 1197 WP_229716589.1 cation:proton antiporter -
  MRX62_RS11350 (MRX62_11365) gloA 2395581..2396108 (-) 528 WP_010893902.1 lactoylglutathione lyase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18211.20 Da        Isoelectric Point: 5.9575

>NTDB_id=727135 MRX62_RS11335 WP_004083791.1 2390878..2391372(+) (ssb) [Xylella fastidiosa subsp. pauca strain 50088]
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKEGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQARQPSQSPQSSPPPMDDFADD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=727135 MRX62_RS11335 WP_004083791.1 2390878..2391372(+) (ssb) [Xylella fastidiosa subsp. pauca strain 50088]
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAACCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTGCGTAAGGACAAGGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATCCGCTATGACAAGTTCACTGGCCAGGATGGTCAGGAGCGCTATGTTACCGAGATCGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGCGATGGCGGTGGTATGGGCGGGGGCGGTGAGCGCCCGCAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGGCTCGGCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PDI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.153

100

0.53
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.5
  ssb Neisseria meningitidis MC58

41.618

100

0.439
  ssb Neisseria gonorrhoeae MS11

41.04

100

0.433