Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   P1K34_RS06655 Genome accession   NZ_CP119598
Coordinates   1343936..1344601 (-) Length   221 a.a.
NCBI ID   WP_109991565.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1042     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1338936..1349601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1K34_RS06650 (P1K34_06650) raiA 1343308..1343856 (-) 549 WP_002988974.1 ribosome-associated translation inhibitor RaiA -
  P1K34_RS06655 (P1K34_06655) comFC/cflB 1343936..1344601 (-) 666 WP_109991565.1 ComF family protein Machinery gene
  P1K34_RS06660 (P1K34_06660) comFA/cflA 1344573..1345898 (-) 1326 WP_136113647.1 DEAD/DEAH box helicase Machinery gene
  P1K34_RS06665 (P1K34_06665) - 1345953..1346585 (+) 633 WP_002983676.1 YigZ family protein -
  P1K34_RS06670 (P1K34_06670) cysK 1346713..1347654 (+) 942 WP_111676226.1 cysteine synthase A -
  P1K34_RS06675 (P1K34_06675) - 1347672..1348049 (-) 378 WP_032464495.1 S1 RNA-binding domain-containing protein -
  P1K34_RS06680 (P1K34_06680) - 1348049..1349449 (-) 1401 WP_276131600.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25193.44 Da        Isoelectric Point: 9.4626

>NTDB_id=727099 P1K34_RS06655 WP_109991565.1 1343936..1344601(-) (comFC/cflB) [Streptococcus pyogenes strain 1042]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKSYIPVPVPVSPGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=727099 P1K34_RS06655 WP_109991565.1 1343936..1344601(-) (comFC/cflB) [Streptococcus pyogenes strain 1042]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATCACCAAGTACTATAAAAGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae TIGR4

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412