Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N0P34_RS09775 Genome accession   NZ_CP104007
Coordinates   2008515..2009054 (+) Length   179 a.a.
NCBI ID   WP_275606831.1    Uniprot ID   -
Organism   Devosia sp. FJ2-5-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2003515..2014054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0P34_RS09760 (N0P34_09765) - 2005395..2006039 (-) 645 WP_275606828.1 LysE family translocator -
  N0P34_RS09765 (N0P34_09770) - 2006147..2006530 (-) 384 WP_275606829.1 rhodanese-like domain-containing protein -
  N0P34_RS09770 (N0P34_09775) - 2006713..2008209 (-) 1497 WP_275606830.1 acetyl-CoA hydrolase/transferase family protein -
  N0P34_RS09775 (N0P34_09780) ssb 2008515..2009054 (+) 540 WP_275606831.1 single-stranded DNA-binding protein Machinery gene
  N0P34_RS09780 (N0P34_09785) - 2009182..2010111 (+) 930 WP_275606832.1 aldo/keto reductase -
  N0P34_RS09785 (N0P34_09790) - 2010536..2012080 (+) 1545 WP_275606833.1 ABC transporter substrate-binding protein -
  N0P34_RS09790 (N0P34_09795) dtd 2012178..2012618 (-) 441 WP_275606834.1 D-aminoacyl-tRNA deacylase -
  N0P34_RS09795 (N0P34_09800) - 2012819..2013346 (-) 528 WP_275606835.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18607.35 Da        Isoelectric Point: 5.9617

>NTDB_id=726947 N0P34_RS09775 WP_275606831.1 2008515..2009054(+) (ssb) [Devosia sp. FJ2-5-3]
MAGSVNKVILVGNLGNDPEVRNLQSGGKVVNLSIATSESWKDRNTGEKREKTEWHRVVIFSEGLARVAESYLRKGSKVYI
EGQLQTRKWQDQSGQDKYSTEVVLQGFNSNLTLLDGRGEGASAGGGEGGGFGGGGGGYGGGGDGGFRGRDNNAGGGGARR
PAANAPAFEPGGMDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=726947 N0P34_RS09775 WP_275606831.1 2008515..2009054(+) (ssb) [Devosia sp. FJ2-5-3]
ATGGCTGGCAGCGTGAACAAGGTTATTCTGGTGGGCAATCTGGGCAATGACCCGGAAGTGCGGAACCTGCAGAGCGGCGG
CAAGGTGGTGAACCTTTCCATCGCCACCTCGGAAAGCTGGAAGGACCGCAATACCGGCGAGAAGCGCGAGAAGACCGAAT
GGCACCGCGTGGTGATCTTCTCGGAAGGTCTTGCCCGCGTGGCCGAAAGTTATTTGCGCAAGGGCAGCAAGGTCTATATC
GAGGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGTCCGGCCAGGACAAATATTCGACCGAAGTGGTGCTGCAGGGATT
CAACTCCAACCTGACGCTGCTTGACGGCCGTGGCGAAGGTGCCAGCGCCGGTGGTGGCGAAGGCGGCGGCTTCGGCGGTG
GTGGCGGCGGCTATGGCGGGGGCGGCGATGGCGGCTTCCGTGGTCGCGACAACAATGCGGGTGGCGGCGGCGCCCGTCGG
CCTGCGGCCAATGCACCGGCCTTCGAGCCCGGCGGCATGGACGACGATATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.763

100

0.559
  ssb Vibrio cholerae strain A1552

54.237

98.883

0.536
  ssb Neisseria meningitidis MC58

39.779

100

0.402
  ssb Neisseria gonorrhoeae MS11

37.912

100

0.385