Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N0H69_RS04970 Genome accession   NZ_CP104006
Coordinates   1151189..1151740 (+) Length   183 a.a.
NCBI ID   WP_050110798.1    Uniprot ID   -
Organism   Yersinia alsatica strain SCPM-O-B-7604     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1146189..1156740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0H69_RS04960 (N0H69_04960) - 1147527..1147880 (+) 354 WP_050110802.1 MmcQ/YjbR family DNA-binding protein -
  N0H69_RS04965 (N0H69_04965) uvrA 1147946..1150777 (-) 2832 WP_050152444.1 excinuclease ABC subunit UvrA -
  N0H69_RS04970 (N0H69_04970) ssb 1151189..1151740 (+) 552 WP_050110798.1 single-stranded DNA-binding protein SSB1 Machinery gene
  N0H69_RS04975 (N0H69_04975) - 1151955..1152623 (+) 669 WP_004711191.1 glutathione S-transferase family protein -
  N0H69_RS04980 (N0H69_04980) - 1152986..1154353 (+) 1368 WP_050110795.1 NCS2 family permease -
  N0H69_RS04985 (N0H69_04985) - 1154562..1156211 (+) 1650 WP_050110793.1 Na+/H+ antiporter -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19296.27 Da        Isoelectric Point: 4.9567

>NTDB_id=726930 N0H69_RS04970 WP_050110798.1 1151189..1151740(+) (ssb) [Yersinia alsatica strain SCPM-O-B-7604]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWQDQSGQERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGAPQQDGGAQGGWGQPQQPQGGNQFSGGQTSRPAQ
AAPAAQPQGGNEPPMDFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=726930 N0H69_RS04970 WP_050110798.1 1151189..1151740(+) (ssb) [Yersinia alsatica strain SCPM-O-B-7604]
ATGGCCAGCAGAGGCGTAAACAAAGTGATTTTGGTCGGGAATTTGGGCCAAGACCCGGAAGTCCGCTACATGCCTAACGG
CGGCGCTGTTGCCAATATCACCCTGGCCACTTCCGAAAGCTGGCGTGATAAAGCAACCGGCGAGCAGAAAGAAAAGACGG
AATGGCACCGTGTAGTGTTATTCGGCAAACTGGCTGAAGTGGCTGGTGAATATCTGCGCAAAGGCTCTCAGGTCTATATT
GAAGGCGCATTGCAAACCCGTAAGTGGCAGGATCAAAGCGGCCAAGAGCGTTATACCACCGAAGTTGTGGTTAACGTGGG
TGGCACCATGCAAATGCTCGGTGGCCGTCAGGGTGGCGGTGCTCCAGCTGGTGGTGGCGCACCACAACAAGACGGTGGCG
CGCAAGGCGGTTGGGGTCAACCTCAGCAACCCCAAGGCGGCAACCAGTTCAGCGGCGGTCAGACTTCACGCCCAGCTCAG
GCAGCGCCAGCAGCACAACCACAAGGCGGCAATGAGCCACCAATGGATTTTGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.936

100

0.776
  ssb Glaesserella parasuis strain SC1401

56.452

100

0.574
  ssb Neisseria meningitidis MC58

47.514

98.907

0.47
  ssb Neisseria gonorrhoeae MS11

47.514

98.907

0.47