Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NYQ88_RS10360 Genome accession   NZ_CP104002
Coordinates   2101812..2102360 (+) Length   182 a.a.
NCBI ID   WP_275654820.1    Uniprot ID   -
Organism   Devosia sp. SD17-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2096812..2107360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYQ88_RS10350 (NYQ88_10350) - 2099392..2099775 (-) 384 WP_275654819.1 rhodanese-like domain-containing protein -
  NYQ88_RS10355 (NYQ88_10355) - 2100007..2101464 (-) 1458 WP_275654899.1 succinate CoA transferase -
  NYQ88_RS10360 (NYQ88_10360) ssb 2101812..2102360 (+) 549 WP_275654820.1 single-stranded DNA-binding protein Machinery gene
  NYQ88_RS10365 (NYQ88_10365) - 2102488..2103417 (+) 930 WP_275654821.1 aldo/keto reductase -
  NYQ88_RS10370 (NYQ88_10370) - 2103828..2105372 (+) 1545 WP_275654822.1 ABC transporter substrate-binding protein -
  NYQ88_RS10375 (NYQ88_10375) dtd 2105460..2105900 (-) 441 WP_275654823.1 D-aminoacyl-tRNA deacylase -
  NYQ88_RS10380 (NYQ88_10380) - 2106171..2106698 (-) 528 WP_275654824.1 hypothetical protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 18979.65 Da        Isoelectric Point: 5.3258

>NTDB_id=726912 NYQ88_RS10360 WP_275654820.1 2101812..2102360(+) (ssb) [Devosia sp. SD17-2]
MAGSVNKVILVGNLGNDPEVRNLPNGGKVVNLSIATSESWKDRNTGERREKTEWHRVVIFSEGLTRVAESYLRKGSKVYI
EGQLQTRKWQDQSGQDKYSTEIVLQGFNSNLTLLDGRGDNAGGGGGGGGSSEGGYGGDGGGYGGGGDGGFRGRDNNAGGG
ARRPAANAPAFEPGGMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=726912 NYQ88_RS10360 WP_275654820.1 2101812..2102360(+) (ssb) [Devosia sp. SD17-2]
ATGGCAGGCAGCGTGAACAAGGTCATTCTGGTGGGCAATCTGGGCAATGACCCGGAAGTGCGGAACCTGCCGAATGGCGG
CAAGGTGGTGAACCTTTCGATCGCCACTTCGGAAAGCTGGAAGGACCGCAACACCGGCGAGCGCCGCGAAAAGACCGAGT
GGCACCGCGTGGTGATCTTCTCGGAAGGTCTGACGCGCGTCGCCGAGAGCTATCTGCGCAAGGGCAGCAAGGTCTATATC
GAAGGCCAGCTGCAGACGCGCAAATGGCAGGACCAGTCCGGCCAGGACAAATATTCCACCGAGATCGTGCTGCAGGGTTT
CAACTCGAACCTGACGCTGCTCGACGGCCGTGGCGATAACGCCGGCGGCGGCGGTGGCGGTGGTGGCAGCAGCGAAGGCG
GCTACGGCGGCGATGGCGGCGGTTATGGTGGGGGCGGCGATGGCGGCTTCCGCGGTCGCGACAACAATGCCGGCGGTGGC
GCACGTCGGCCTGCGGCAAACGCCCCGGCCTTCGAGCCCGGCGGGATGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.403

100

0.56
  ssb Vibrio cholerae strain A1552

52.247

97.802

0.511
  ssb Neisseria meningitidis MC58

40.761

100

0.412
  ssb Neisseria gonorrhoeae MS11

40.217

100

0.407