Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   P1K87_RS06295 Genome accession   NZ_CP119596
Coordinates   1209697..1210362 (+) Length   221 a.a.
NCBI ID   WP_032871259.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MG-2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1204697..1215362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1K87_RS06270 (P1K87_06270) - 1205035..1206393 (+) 1359 WP_032874552.1 HAMP domain-containing sensor histidine kinase -
  P1K87_RS06275 (P1K87_06275) - 1206513..1207448 (+) 936 WP_065465011.1 ATP-binding cassette domain-containing protein -
  P1K87_RS06280 (P1K87_06280) - 1207429..1208160 (+) 732 WP_032874554.1 ABC transporter permease -
  P1K87_RS06285 (P1K87_06285) - 1208178..1208369 (+) 192 WP_003154894.1 hypothetical protein -
  P1K87_RS06290 (P1K87_06290) - 1208435..1209685 (+) 1251 WP_032874556.1 ATP-binding protein -
  P1K87_RS06295 (P1K87_06295) comA 1209697..1210362 (+) 666 WP_032871259.1 response regulator transcription factor Regulator
  P1K87_RS06300 (P1K87_06300) - 1210555..1210737 (+) 183 WP_032874558.1 plantaricin C family lantibiotic -
  P1K87_RS06305 (P1K87_06305) - 1210824..1214006 (+) 3183 WP_032874560.1 type 2 lanthipeptide synthetase LanM family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25144.33 Da        Isoelectric Point: 6.2410

>NTDB_id=726845 P1K87_RS06295 WP_032871259.1 1209697..1210362(+) (comA) [Bacillus amyloliquefaciens strain MG-2]
MIKILLIDDHIGVAQGTKAILEKSNKMGVTILSCCKEVLNHLKHYEYDLLLLDLYMPELNGMELSKMILRESPDQKIIIY
TGFDISVHFNLLVEVGVSGFISKSSTEEHMIKVIESVIEGDTIIPTHLFKQLRRTEANTFNIDKLEDRIRDITLNEREQD
ILAGVAEGMTNRELSAKLLISQRAVEYILTGVYNKLGVKSRTEALIKANRYSLISMKTIYE

Nucleotide


Download         Length: 666 bp        

>NTDB_id=726845 P1K87_RS06295 WP_032871259.1 1209697..1210362(+) (comA) [Bacillus amyloliquefaciens strain MG-2]
ATGATAAAGATTTTATTAATTGATGATCATATTGGTGTTGCTCAAGGGACAAAAGCCATTCTTGAAAAAAGCAATAAAAT
GGGAGTAACAATATTGTCTTGCTGTAAAGAAGTACTTAATCACCTTAAGCATTACGAGTATGACTTACTTTTACTTGATT
TATATATGCCGGAGTTAAATGGAATGGAATTGTCAAAAATGATTCTTAGAGAGAGTCCCGATCAAAAAATTATAATTTAT
ACTGGTTTTGATATCTCTGTCCATTTCAATCTTTTGGTTGAAGTTGGTGTTTCCGGGTTCATAAGTAAGTCTTCAACAGA
AGAGCATATGATAAAAGTAATCGAAAGTGTCATTGAGGGAGATACCATTATTCCTACTCATCTCTTTAAACAATTAAGAA
GAACAGAAGCAAATACGTTCAACATTGATAAGCTTGAAGATAGAATAAGAGATATTACTTTAAATGAAAGAGAACAAGAT
ATCTTAGCGGGCGTAGCGGAGGGAATGACAAACCGGGAATTATCAGCAAAGCTGTTGATCAGTCAAAGAGCGGTTGAATA
CATTCTTACTGGTGTGTACAACAAGCTCGGAGTAAAATCCAGAACAGAGGCGCTGATCAAAGCAAATCGATATTCATTAA
TTTCTATGAAAACTATATATGAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)

Bacterial regulatory proteins, luxR family (GerE)

(154-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

40.758

95.475

0.389