Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   N0B18_RS13070 Genome accession   NZ_CP103995
Coordinates   2420535..2421605 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis strain SRCM117109     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2415535..2426605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0B18_RS13025 (N0B18_13025) tapA 2416014..2416775 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  N0B18_RS13030 (N0B18_13030) yqzG 2417047..2417373 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  N0B18_RS13035 (N0B18_13035) spoIITA 2417415..2417594 (-) 180 WP_014480252.1 YqzE family protein -
  N0B18_RS13040 (N0B18_13040) comGG 2417665..2418039 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  N0B18_RS13045 (N0B18_13045) comGF 2418040..2418423 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  N0B18_RS13050 (N0B18_13050) comGE 2418449..2418796 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  N0B18_RS13055 (N0B18_13055) comGD 2418780..2419211 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  N0B18_RS13060 (N0B18_13060) comGC 2419201..2419497 (-) 297 WP_069964211.1 comG operon protein ComGC Machinery gene
  N0B18_RS13065 (N0B18_13065) comGB 2419511..2420548 (-) 1038 WP_031600685.1 comG operon protein ComGB Machinery gene
  N0B18_RS13070 (N0B18_13070) comGA 2420535..2421605 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  N0B18_RS13075 (N0B18_13075) - 2421817..2422014 (-) 198 WP_014480259.1 CBS domain-containing protein -
  N0B18_RS13080 (N0B18_13080) corA 2422016..2422969 (-) 954 WP_014480260.1 magnesium transporter CorA -
  N0B18_RS13085 (N0B18_13085) yqhB 2423111..2424439 (+) 1329 WP_014480261.1 hemolysin family protein -
  N0B18_RS13090 (N0B18_13090) rsbRD 2424492..2425328 (-) 837 WP_014480262.1 RsbT co-antagonist protein RsbRD -
  N0B18_RS13100 (N0B18_13100) mgsR 2425552..2425932 (-) 381 WP_069964212.1 transcriptional regulator MgsR -
  N0B18_RS13105 (N0B18_13105) yqgY 2426164..2426409 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=726847 N0B18_RS13070 WP_004399124.1 2420535..2421605(-) (comGA) [Bacillus subtilis strain SRCM117109]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=726847 N0B18_RS13070 WP_004399124.1 2420535..2421605(-) (comGA) [Bacillus subtilis strain SRCM117109]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAAGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCAACTGGTTCAGGGAAGACTACCACACTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATTGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGTCGCCAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGGAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1